Pairwise Alignments

Query, 324 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 367 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  170 bits (431), Expect = 4e-47
 Identities = 127/340 (37%), Positives = 184/340 (54%), Gaps = 44/340 (12%)

Query: 23  VIAAILLLIAVA-APFVLYPVFLM----KVLCFALFACAFNLLIGFAGLLSFGHAAFFGG 77
           V   I+L + +A APF+   V  +    KVL F     +F+LL+G+ G++SF H  FFG 
Sbjct: 17  VALLIVLFLGLAFAPFLFPGVKALNVAAKVLIFVALVASFDLLLGYTGIVSFAHTMFFGI 76

Query: 78  AAY---IAAHVVKEWGWAPEF-GLIAATAVAGLMGLVFGLIAIRRQGIYFAMITLALSQM 133
            AY   IA +  +   WA    G+  A  V+ ++ L+ GL ++R + I+FAMITLA++  
Sbjct: 77  GAYGVAIALNAAETPSWAAILVGVFGALVVSLVLSLLIGLFSLRVKAIFFAMITLAVASA 136

Query: 134 VFFLALQLP-FTHGEDGIQ--------------GVPRGTLFGLFDLGQPLTMYYTVLAIF 178
              LA QL  FT GEDG+                 P  T  G  DL   L  YY +    
Sbjct: 137 FLTLASQLSDFTGGEDGLTFRVPELLSPGFTLTEEPLQTPLGEVDLNGRLITYYLIFLAV 196

Query: 179 VAGFALIWRTVHSPFGQVLKAIRENEPRAVSLGYRTDRYKLVAFVLSASLAGLAGGTKAL 238
            A F  I R V+SPFG+VL+AIREN+ RA +LGYRT  Y+ ++ VLSAS A LAG   AL
Sbjct: 197 TAIFLTILRIVNSPFGRVLQAIRENDFRAEALGYRTVVYRTLSNVLSASFATLAGCLLAL 256

Query: 239 VFQL-ASLTDVTWQMSGEVVLMTLLGGMGTLFGPVVGAGLVVTLESYL---------AST 288
             +     T +++++  +++L+ ++GGMGTL+G  +G+ L V  +SYL         A+ 
Sbjct: 257 WLRYNGPDTSLSFEIMLDILLIVVIGGMGTLYGAFIGSVLFVVAQSYLQDLLRMAGSATE 316

Query: 289 SLP-VPVV---------IGCIFVVCVLVFRRGIVGELLAR 318
            LP +P +         +G +FV+ V  F  GIVG+L  R
Sbjct: 317 GLPLLPALLTPDRWLLWLGVLFVLSVYYFPTGIVGKLRER 356