Pairwise Alignments

Query, 324 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 334 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  177 bits (448), Expect = 4e-49
 Identities = 115/300 (38%), Positives = 173/300 (57%), Gaps = 12/300 (4%)

Query: 21  TAVIAAILLLIAVAAPFVLYPVFLMKVLCFALFACAFNLLIGFAGLLSFGHAAFFGGAAY 80
           T + AA+ LL+ +  P         +VL FAL A   NLL+G+ GL+SFG   FFG  +Y
Sbjct: 10  TLLAAAVALLLPLLLPS---GTLATEVLVFALAALGCNLLLGYTGLMSFGQGIFFGVGSY 66

Query: 81  IAAHVVKEWGWAPEFGLIAATAVAGLMGLVFGLIAIRRQGIYFAMITLALSQMVFFLALQ 140
            A  V+ +   A    L  A     L+ L+ G  +IR++G YF M+TLA +QM +FLA  
Sbjct: 67  TAGVVLLQLKLALLPALALAALGGALVALLVGWFSIRQRGTYFVMLTLAFAQMFYFLAYT 126

Query: 141 LP-FTHGEDGIQGVPRG--TLFGLFDLGQPLT---MYYTVLAI-FVAGFALIWRTVHSPF 193
           +   T G++G+  +PR    LFGL  L  P T    YYTV+AI FV  F L+ R V S  
Sbjct: 127 MKDVTGGDNGLLDIPRPPLALFGLTLL--PTTSSWQYYTVVAILFVLVFWLLQRVVDSVL 184

Query: 194 GQVLKAIRENEPRAVSLGYRTDRYKLVAFVLSASLAGLAGGTKALVFQLASLTDVTWQMS 253
           G+ L A+RENE RA +LGY     KL AFV+S ++ GLAGG  A++  +A L+++ +  S
Sbjct: 185 GKTLLAVRENEARASALGYDVRLLKLAAFVISGAVTGLAGGLHAMMTGVAPLSNIEYHTS 244

Query: 254 GEVVLMTLLGGMGTLFGPVVGAGLVVTLESYLASTSLPVPVVIGCIFVVCVLVFRRGIVG 313
             +++MT++GG G LF  V+GA   V + ++L++      +++G + +   L  ++G+ G
Sbjct: 245 EAILVMTVIGGTGNLFASVLGASFYVLVGNWLSTLWPRWLMLLGLLLIAVSLYMQKGLFG 304