Pairwise Alignments

Query, 571 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 439 a.a., PAS domain S-box protein from Pantoea agglomerans CFBP13505 P0401

 Score =  256 bits (654), Expect = 1e-72
 Identities = 159/429 (37%), Positives = 232/429 (54%), Gaps = 20/429 (4%)

Query: 129 RAADSNGKLAAIDRSQAVIEFALDGTIQTANQRFLDLTGYRLEELQGRHHRMFLDKADAA 188
           + + S   L++++ S A+IEF+ DG+I +AN  FL   GY L E++ +HH +F       
Sbjct: 17  KRSHSAATLSSLNGSIAMIEFSPDGSILSANALFLARMGYTLAEIEDQHHSLFCTAEQLE 76

Query: 189 EPAYAAFWDKLGRGEHQSGEFRRLTKSGAQVWIQATYTPILDPTGKPWKIVKFATDVTEQ 248
              Y  FW +L RGE  S +F R+ K+G  VW++A Y P+ +  G+  KIVK ATD+T+ 
Sbjct: 77  SREYKDFWLRLNRGESFSDKFLRVAKNGRPVWLEANYVPVQNRHGRVIKIVKLATDITDH 136

Query: 249 RLRNADFRAQIEAINRSQAVIHFKPDGTILDANDNFLKAMGYRLDEVVGQNHRLFVSPEQ 308
                + RA   AI RS AVI F   G +L ANDNFLK MGYR +EV G +HR F S   
Sbjct: 137 INDAQEQRAITTAIERSMAVIAFNLKGEVLKANDNFLKTMGYRREEVEGVHHRRFCSQAL 196

Query: 309 QASAEYSQFWEILRSGKFHTSLYRRRARNGSDVWINASYNPVLSETGEVLKVVKFATDVT 368
           + S EYS+FW+ L  G+F +  + R  + G  +W+ A+YNPV  E G + K+VKFATDVT
Sbjct: 197 RDSREYSEFWQQLNRGEFVSGQFPRVNKRGETIWLRATYNPVFDEQGRLYKIVKFATDVT 256

Query: 369 GMIKSRLEAIEFSKRTVQKVIEVGDSVERMCGSATQISTDILASR-KVVDEIDRRTSAAD 427
             ++   +  + ++R     ++  +S        T++  D++AS  + ++ +        
Sbjct: 257 AQVEKNQQEHDAAQRAYHTALQTDES--------TKLGADVIASSVQTMNALAGELQGIS 308

Query: 428 SATGRLNEAAAAMDGVAKFIDAIASQIKLLSLNATIEAARAGEAGRGFAVVATEVKSLAE 487
                L+E++  +  + + I  IA Q  LL+LNA IEAARAG  GR FAVVA EV++LA 
Sbjct: 309 GDITGLSESSERIGAIVEGIRRIADQTNLLALNAAIEAARAGTHGRSFAVVANEVRTLAA 368

Query: 488 QTSGATERIGVEIVAMQEVVRQVVEALGGIARSVDSVKSTVHGVAAGAEEQMSLSDGVAA 547
             + AT  I   I   Q+       AL GI     ++K    GV    E     + GV A
Sbjct: 369 NINRATTDIENRI---QQNHLLASRALKGIE---SNLKRADQGVQLAQE-----AGGVIA 417

Query: 548 NMREARNGV 556
            +RE    V
Sbjct: 418 EIREGATDV 426



 Score =  203 bits (516), Expect = 1e-56
 Identities = 104/244 (42%), Positives = 142/244 (58%)

Query: 9   SYDRAKLDALDKSQAIVEFTMDGVVVDANRIFLDAMGYSLEEVRGQHHRKFVDPVEAGGA 68
           S+  A L +L+ S A++EF+ DG ++ AN +FL  MGY+L E+  QHH  F    +    
Sbjct: 19  SHSAATLSSLNGSIAMIEFSPDGSILSANALFLARMGYTLAEIEDQHHSLFCTAEQLESR 78

Query: 69  DYRRFWDELRAGRFQSAEYRRITRFGEEIWLRATYNPVLGASGRVTGVVKFATVVTDEKL 128
           +Y+ FW  L  G   S ++ R+ + G  +WL A Y PV    GRV  +VK AT +TD   
Sbjct: 79  EYKDFWLRLNRGESFSDKFLRVAKNGRPVWLEANYVPVQNRHGRVIKIVKLATDITDHIN 138

Query: 129 RAADSNGKLAAIDRSQAVIEFALDGTIQTANQRFLDLTGYRLEELQGRHHRMFLDKADAA 188
            A +      AI+RS AVI F L G +  AN  FL   GYR EE++G HHR F  +A   
Sbjct: 139 DAQEQRAITTAIERSMAVIAFNLKGEVLKANDNFLKTMGYRREEVEGVHHRRFCSQALRD 198

Query: 189 EPAYAAFWDKLGRGEHQSGEFRRLTKSGAQVWIQATYTPILDPTGKPWKIVKFATDVTEQ 248
              Y+ FW +L RGE  SG+F R+ K G  +W++ATY P+ D  G+ +KIVKFATDVT Q
Sbjct: 199 SREYSEFWQQLNRGEFVSGQFPRVNKRGETIWLRATYNPVFDEQGRLYKIVKFATDVTAQ 258

Query: 249 RLRN 252
             +N
Sbjct: 259 VEKN 262