Pairwise Alignments

Query, 571 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 594 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  281 bits (718), Expect = 7e-80
 Identities = 184/552 (33%), Positives = 282/552 (51%), Gaps = 61/552 (11%)

Query: 13  AKLDALDKSQAIVEFTMDGVVVDANRIFLDAMGYSLEEVRGQHHRKFVDPVEAGGADYRR 72
           A L AL KSQAI+EF + G ++ AN  F  A+GY L E+ G+HH  FV+P      DY+ 
Sbjct: 12  AVLAALSKSQAIIEFDLSGKILTANESFCRAIGYELAEIVGRHHSLFVEPSVVSSPDYKA 71

Query: 73  FWDELRAGRFQSAEYRRITRFGEEIWLRATYNPVLGASGRVTGVVKFATVVTDEKLRAAD 132
           FW +L +G+F   +Y+RI + G E+W+ A+YNPV    GR   VVK AT +T+ KLRAA+
Sbjct: 72  FWSKLASGQFDQRQYKRIGKGGREVWIEASYNPVF-RRGRPVKVVKIATDITERKLRAAE 130

Query: 133 SNGKLAAIDRSQAVIEFALDGTIQTANQRFLDLTGYRLEELQGRHHRMFLDKADAAEPAY 192
             GK+ A+ R+QA+IEF+ +G + TAN  FL   GY L E+QGRHH MF D A      Y
Sbjct: 131 DAGKIDALSRAQAIIEFSPEGEVLTANDNFLAALGYSLSEVQGRHHSMFCDPAYTQSSEY 190

Query: 193 AAFWDKLGRGEHQSGEFRRLTKSGAQVWIQATYTPILDPTGKPWKIVKFATDVTEQRLRN 252
             FW +L  G+  + EF RL K G +V+IQA+Y PI D  GK +K+VKFATDVT  R+ N
Sbjct: 191 KQFWQRLAGGDLVADEFMRLGKGGRKVFIQASYNPIFDMNGKVFKVVKFATDVT-GRVEN 249

Query: 253 ADFRAQIEAINRSQAVIHFKPDGTILDANDNFLKAMGYRLDEVVGQNHRLFVSPEQQASA 312
            +  AQ          ++   +G +  + D                  + F+   ++   
Sbjct: 250 VETLAQ---------CLNDLAEGDLAQSID------------------KPFIPSLERLRT 282

Query: 313 EYSQFWEILRSGKFHTSLYRRRARNGSDVWINASYNPVLSETGEVLKVVKFATDVTGMIK 372
           +++   E L+      S       +GS+                  ++   A D+    +
Sbjct: 283 DFNAASEKLKRAMTLVSENAGAISSGSN------------------EIRSAADDLAKRTE 324

Query: 373 SRLEAIEFSKRTVQKVIEVGDSVERMCGSATQISTDILASRKVVDEIDRRTSAADSATGR 432
            +  +IE +   ++++    +   R    A +I   +  +R   +   +    A SA  +
Sbjct: 325 QQAASIEETAAALEEITTAVNDSSRRADEAGKI---VARARDHAEHSGQVVRDAISAMDQ 381

Query: 433 LNEAAAAMDGVAKFIDAIASQIKLLSLNATIEAARAGEAGRGFAVVATEVKSLAEQTSGA 492
           + +++  +  +   ID IA Q  LL+LNA +EAARAGEAG+GFAVVA EV+ LA++++ A
Sbjct: 382 IEKSSREISNIIGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSATA 441

Query: 493 TERI-------GVEIVAMQEVVRQVVEALGGIARSVDSVKSTVHGVAAGAEEQMSLSDGV 545
            + I       G ++     +V +   AL  IA  V  + + V  +   A EQ +     
Sbjct: 442 AKEIKSLINASGAQVENGVGLVTRAGSALQEIAEQVRDINTNVVAIVEAAREQST----A 497

Query: 546 AANMREARNGVE 557
            A + +A N V+
Sbjct: 498 LAEINQAVNTVD 509



 Score =  253 bits (647), Expect = 1e-71
 Identities = 159/453 (35%), Positives = 248/453 (54%), Gaps = 39/453 (8%)

Query: 129 RAADSNGKLAAIDRSQAVIEFALDGTIQTANQRFLDLTGYRLEELQGRHHRMFLDKADAA 188
           R A++   LAA+ +SQA+IEF L G I TAN+ F    GY L E+ GRHH +F++ +  +
Sbjct: 6   RGANAVAVLAALSKSQAIIEFDLSGKILTANESFCRAIGYELAEIVGRHHSLFVEPSVVS 65

Query: 189 EPAYAAFWDKLGRGEHQSGEFRRLTKSGAQVWIQATYTPILDPTGKPWKIVKFATDVTEQ 248
            P Y AFW KL  G+    +++R+ K G +VWI+A+Y P+    G+P K+VK ATD+TE+
Sbjct: 66  SPDYKAFWSKLASGQFDQRQYKRIGKGGREVWIEASYNPVFR-RGRPVKVVKIATDITER 124

Query: 249 RLRNADFRAQIEAINRSQAVIHFKPDGTILDANDNFLKAMGYRLDEVVGQNHRLFVSPEQ 308
           +LR A+   +I+A++R+QA+I F P+G +L ANDNFL A+GY L EV G++H +F  P  
Sbjct: 125 KLRAAEDAGKIDALSRAQAIIEFSPEGEVLTANDNFLAALGYSLSEVQGRHHSMFCDPAY 184

Query: 309 QASAEYSQFWEILRSGKFHTSLYRRRARNGSDVWINASYNPVLSETGEVLKVVKFATDVT 368
             S+EY QFW+ L  G      + R  + G  V+I ASYNP+    G+V KVVKFATDVT
Sbjct: 185 TQSSEYKQFWQRLAGGDLVADEFMRLGKGGRKVFIQASYNPIFDMNGKVFKVVKFATDVT 244

Query: 369 GMIKSRLEAIEFSKRTVQKVIE--VGDSVER-MCGSATQISTDI-LASRKVVDEIDRRTS 424
           G    R+E +E   + +  + E  +  S+++    S  ++ TD   AS K+   +   + 
Sbjct: 245 G----RVENVETLAQCLNDLAEGDLAQSIDKPFIPSLERLRTDFNAASEKLKRAMTLVSE 300

Query: 425 AADSATGRLNEAAAAMDGVAK-------FIDAIASQIKLLSLNATIEAARAGEAGRGFAV 477
            A + +   NE  +A D +AK        I+  A+ ++ ++      + RA EAG+    
Sbjct: 301 NAGAISSGSNEIRSAADDLAKRTEQQAASIEETAAALEEITTAVNDSSRRADEAGK---- 356

Query: 478 VATEVKSLAEQTSGATERIGVEIVAMQEVVRQVVEALGGIARSVDSVKSTVHGV---AAG 534
           +    +  AE +               +VVR  + A+  I +S   + S + GV    A 
Sbjct: 357 IVARARDHAEHSG--------------QVVRDAISAMDQIEKSSREI-SNIIGVIDEIAF 401

Query: 535 AEEQMSLSDGV-AANMREARNGVEAINRNLQEM 566
               ++L+ GV AA   EA  G   + + ++E+
Sbjct: 402 QTNLLALNAGVEAARAGEAGKGFAVVAQEVREL 434



 Score =  111 bits (278), Expect = 7e-29
 Identities = 51/114 (44%), Positives = 78/114 (68%)

Query: 11  DRAKLDALDKSQAIVEFTMDGVVVDANRIFLDAMGYSLEEVRGQHHRKFVDPVEAGGADY 70
           D  K+DAL ++QAI+EF+ +G V+ AN  FL A+GYSL EV+G+HH  F DP     ++Y
Sbjct: 131 DAGKIDALSRAQAIIEFSPEGEVLTANDNFLAALGYSLSEVQGRHHSMFCDPAYTQSSEY 190

Query: 71  RRFWDELRAGRFQSAEYRRITRFGEEIWLRATYNPVLGASGRVTGVVKFATVVT 124
           ++FW  L  G   + E+ R+ + G +++++A+YNP+   +G+V  VVKFAT VT
Sbjct: 191 KQFWQRLAGGDLVADEFMRLGKGGRKVFIQASYNPIFDMNGKVFKVVKFATDVT 244