Pairwise Alignments

Query, 178 a.a., RNA polymerase sigma-H factor from Azospirillum sp. SherDot2

Subject, 193 a.a., RNA polymerase subunit sigma from Pseudomonas fluorescens FW300-N2C3

 Score = 81.6 bits (200), Expect = 7e-21
 Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 12/177 (6%)

Query: 7   GDRKAFGTLTRRHLRRSIALAQRVVGNAADAEEVAQDAFLQIWANADRWRGDGTRFTTWL 66
           GD++AF  L  ++  + + L  R V +  +A++VAQ+AF++ +     +RGD + F TWL
Sbjct: 17  GDKRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFRGD-SAFYTWL 75

Query: 67  YRIVVNRAIDYKRRRSFAPLDAADEIADPAW-----------SAETVIDGIRIGAAVDAA 115
           YRI +N A +Y   R   P D+     D  +           S E  +    I   V   
Sbjct: 76  YRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERALLRDEIEGTVHRT 135

Query: 116 IAALPERQRAALSLCYHEEMTCAEASEILQVSVSAMESLLVRARRVVRARLQPLIRQ 172
           I  LPE  R AL+L   + ++  + + ++Q  V  + S + RAR  +   LQPL+++
Sbjct: 136 IQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKALQPLLQE 192