Pairwise Alignments

Query, 178 a.a., RNA polymerase sigma-H factor from Azospirillum sp. SherDot2

Subject, 192 a.a., hypothetical protein from Pseudomonas lactucae CFBP13502

 Score =  139 bits (350), Expect = 3e-38
 Identities = 75/158 (47%), Positives = 108/158 (68%), Gaps = 2/158 (1%)

Query: 11  AFGTLTRRHLRRSIALAQRVVGNAADAEEVAQDAFLQIWANADRWRGDGTRFTTWLYRIV 70
           A   + RR L R +ALA R++G+A +A +VAQ++FL+IW +A RWR    RF TWL+R+ 
Sbjct: 21  AVNEMVRRKLPRLLALASRLLGDADEARDVAQESFLRIWRHAARWRSGEARFDTWLHRVA 80

Query: 71  VNRAIDYKRRRSFAPLDAAD--EIADPAWSAETVIDGIRIGAAVDAAIAALPERQRAALS 128
           +N   D  RRR   PLD  D  E+AD A SA+  +D  +  A V AA+AALPERQR A+ 
Sbjct: 81  LNLCHDRLRRRKERPLDEYDLLELADSAPSADEQLDTAQRNARVAAALAALPERQREAIV 140

Query: 129 LCYHEEMTCAEASEILQVSVSAMESLLVRARRVVRARL 166
           L Y++E++  +A+ ++ +SV A+ESLL RARR +R++L
Sbjct: 141 LQYYQELSNIDAAALMNISVEALESLLSRARRQLRSQL 178