Pairwise Alignments

Query, 369 a.a., Spermidine-binding periplasmic protein SpuE from Azospirillum sp. SherDot2

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 85/321 (26%), Positives = 134/321 (41%), Gaps = 25/321 (7%)

Query: 40  AQSKSLKVGVYGGYFKDSFDKHIFPDFTKATGIAVEAVAEPTGEAWLIQLEQAARAKQAP 99
           A+ K L    +G Y        I   FTK TGI V      + E    +L    +     
Sbjct: 24  AEDKELVFMNWGPYINSG----ILEQFTKETGIKVIYSTYESNETLYAKL----KTHNQG 75

Query: 100 ADVSMMSQVAMLKGMAAELWAPLDPARLPNAAKVKPALMNK-YPDGRLSGIGAVSWYITL 158
            D+ + S   + K     +   +D ++L N   +    ++K Y       I  V     L
Sbjct: 76  YDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKPYDPNNDYSIPHVVAITGL 135

Query: 159 VTNTKSY-PQAPESWATLWDPANKDKLGLLALVSNSFLLDVTAATFFGGPKHLDSEQGQL 217
             NT  Y P   +SW  LW P  K +L L+      F + +    + G     D +Q   
Sbjct: 136 AVNTDMYDPNDFQSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNST--DDKQID- 192

Query: 218 ECFKKLAELKNNVKLWYRDEAQFEAALKSGEVPMGQYYHDVTGLAAADGHPVRSTFPKEG 277
           E + +L +L  NV ++  D     A   SGEV +G  ++     A  +G P++  FPKEG
Sbjct: 193 EAYAELQKLMPNVLVFNSDNPA--APYLSGEVGLGMLWNGSAAAAQKEGLPIKLVFPKEG 250

Query: 278 GILDSGSWAVSKASKAADLAHVFIDYMCQPQIQALLSRKVGTSPTIDRSATDLTDKEFAA 337
           GI    ++A+S  +K  D AH  ID++ +P+I   +SR  G    +  S     DK    
Sbjct: 251 GIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGYLTGVKAS----NDK---- 302

Query: 338 VSSDLAPIVPRYDLYVSKADW 358
              D+AP+ P  +  + + +W
Sbjct: 303 -FQDVAPLFPSQE-DLDRVEW 321