Pairwise Alignments

Query, 1062 a.a., multidrug efflux RND transporter permease subunit OqxB28 from Azospirillum sp. SherDot2

Subject, 1059 a.a., Multidrug efflux transporter MexF from Pseudomonas fluorescens FW300-N2E2

 Score = 1335 bits (3454), Expect = 0.0
 Identities = 678/1038 (65%), Positives = 831/1038 (80%), Gaps = 1/1038 (0%)

Query: 1    MNISKFFIDRPIFAGVLSVALFLAGAIAVFRLPISEYPEVVPPSVVVRAQFPGANPKVIA 60
            M  S+FFI RPIFA VLS+ + +AGAI++F+LPISEYPEVVPP+VVVRA FPGANPKVI 
Sbjct: 1    MKFSQFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIG 60

Query: 61   ETVASPLEEQINGVEGMLYMQSQANSDGNLALTVTFKLGTDPDKAQQLVQNRVAQAMPRL 120
            ETVA+PLE+ I GVE MLYM SQ+ +DG + LT+TF LGTD D AQ  VQNRV +  P+L
Sbjct: 61   ETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGTDLDNAQVQVQNRVTRTEPKL 120

Query: 121  PSDVQRLGVATVKSSPTLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLTRISGVGEVQVW 180
            P +V R+G+   K+SP LTMVVHL SP+ RYDM YL NYA+LN+KD L R+ G+G+VQ++
Sbjct: 121  PEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLDGIGDVQLF 180

Query: 181  GAGDYAMRVWLDPGKVAQRGLTATDVVNSIREQNVQVAAGVIGASPSLPDVPMQLSINAR 240
            G GDY++RVWLDP K A R LTATDVV +IREQN QVAAG +GA P+      QLSIN +
Sbjct: 181  GMGDYSLRVWLDPNKTASRNLTATDVVTAIREQNRQVAAGALGAPPAPNAQAFQLSINTQ 240

Query: 241  GRLKTADEFGDIVLKTGGEGGVTRLRDVARVELAAAQYGLRSLLDNKPAVALGITQTPDA 300
            GRL   +EF +I++++G  G +TRL+D+ARVEL ++QY LRSLLDN+PAVA+ I Q P +
Sbjct: 241  GRLVNEEEFENIIIRSGANGEITRLKDIARVELGSSQYALRSLLDNQPAVAIPIFQRPGS 300

Query: 301  NALAISDEVRKVMAELKGDMPDGVDYSIVYDPTQFVRSSIEAVVHTLLEAVALVVLVVIV 360
            NA+ IS++VR  M ELK   P G+DYSIVYDPT FVR SIEAVVHTL EA+ LVVLVVI+
Sbjct: 301  NAIQISNDVRAKMEELKKGFPAGMDYSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVIL 360

Query: 361  FLQTWRASIIPLLAVPISIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVE 420
            FLQTWRASIIPL+AVP+S++GTF+++  FGFS+NALSLFG+VLAIGIVVDDAIVVVENVE
Sbjct: 361  FLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 421  RNIASGLSARDATIRAMQEVSGPIIAIALTLVAVFVPLAAMTGLTGEFYKQFAMTIAIST 480
            RNI  GL+  +AT RAM EV+GPIIA AL L AVFVP A ++GLTG+FYKQFA+TIAIST
Sbjct: 421  RNIELGLTPVEATKRAMGEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 481  VISAFNSLTLSPALAAVLLRGHDEPQDWLTRAMNRVFGGF-FRLFNRVFHRASEGYGRGV 539
            VISA NSLTLSPALAAVLL+GHD P+D  ++ +++VFGG+ FR FNR F RAS GY   V
Sbjct: 481  VISAINSLTLSPALAAVLLKGHDAPKDRFSKFLDKVFGGWLFRPFNRFFERASHGYVGTV 540

Query: 540  GGVVRRKGVMLAVYALLIGATVLLGRSVPSGFVPMQDKEYLISFAQLPNGASLDRTEAVI 599
              V+R  G+ L +YA L+  T     + P+GFVP QDK+YL++FAQLP+ ASLDRTE VI
Sbjct: 541  ARVIRSSGIALVLYAGLMVLTFFGFSTTPTGFVPGQDKQYLVAFAQLPDAASLDRTEDVI 600

Query: 600  REMTDIALKRPGVQSAVAFPGLSVNGFTNSSSAGIVFVTLKPFAERKDPSLSAGAIAMDL 659
            + M+D+ALK+PGV+SAVAFPGLS+NGFTNS +AGIVFVTLKPF ERKDPS+SAGAIA  L
Sbjct: 601  KRMSDLALKQPGVESAVAFPGLSINGFTNSPNAGIVFVTLKPFDERKDPSMSAGAIAGAL 660

Query: 660  QQRYAGLKEAFVAIFPPPPVMGLGQLGGFKMQLEDRGNLGYEALSDAVNAFVKRAAQTPE 719
              +YAG++EA++AIFPPPPV GLG +GGF++Q+EDRGNLGY+ L       + ++   PE
Sbjct: 661  NGQYAGIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLGYDELYKETMNIITKSRSVPE 720

Query: 720  LGPTFSAYQINVPQLDVDLDRVKAKQLGVNVADVFDTMQIYLGSLYVNDFNAFGRVYQVR 779
            L   F++Y +NVPQ+D  +DR KAK  GV V+D+FDT+QIYLGSLY NDFN FGR YQV 
Sbjct: 721  LAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQIYLGSLYANDFNRFGRTYQVN 780

Query: 780  VQADAPFRDTADDIGVLKTRNAAGTMVPLSSLVTVQPGYGPEMVVRYNGFTAADVNGGPA 839
            VQA+  FR  +D IG LK RN  G M+PL++ + V    GP+ V+ YNGF  A++NG  A
Sbjct: 781  VQAEQQFRLESDQIGQLKVRNNRGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAA 840

Query: 840  PGFSSGQAEAAAERIAAEVLPRGVKLEWTDLTYQKILVGNAGLWVFPISVLLVFLVLAAQ 899
            PG+SSGQAE A E++  + LP G+  EWTDLTYQ+IL GN  L+VFP+ VLL FLVLAAQ
Sbjct: 841  PGYSSGQAEKAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ 900

Query: 900  YESLTLPLAILLIVPMSVLSALFGVWLTGGDNNIFTQIGFMVLVGLSAKNAILIVEFARE 959
            YES +LPLA++LIVPM++LSA+ GV L+GGDNNIFTQIG +VLVGL+ KNAILIVEFA++
Sbjct: 901  YESWSLPLAVILIVPMTLLSAITGVILSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKD 960

Query: 960  LEHEGRGVVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGAEMRHAMGVAVFAGMI 1019
             + EG   + A +EA RLRLRPILMTS AFIMGVVPLV SSGAGAEMRHAMGVAVF+GM+
Sbjct: 961  KQLEGMNPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFSSGAGAEMRHAMGVAVFSGML 1020

Query: 1020 GVTLFGLVLTPVFYVLLR 1037
            GVT FGL+LTPVFYVL+R
Sbjct: 1021 GVTFFGLLLTPVFYVLIR 1038



 Score = 43.1 bits (100), Expect = 1e-07
 Identities = 33/151 (21%), Positives = 64/151 (42%)

Query: 888  SVLLVFLVLAAQYESLTLPLAILLIVPMSVLSALFGVWLTGGDNNIFTQIGFMVLVGLSA 947
            +++LV LV+    ++    +  L+ VP+S++     + L G   N  +  G ++ +G+  
Sbjct: 350  ALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVV 409

Query: 948  KNAILIVEFARELEHEGRGVVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGAEMR 1007
             +AI++VE        G   V+A   A      PI+ T++      VP    SG   +  
Sbjct: 410  DDAIVVVENVERNIELGLTPVEATKRAMGEVTGPIIATALVLCAVFVPAAFISGLTGQFY 469

Query: 1008 HAMGVAVFAGMIGVTLFGLVLTPVFYVLLRK 1038
                + +    +   +  L L+P    +L K
Sbjct: 470  KQFALTIAISTVISAINSLTLSPALAAVLLK 500