Pairwise Alignments

Query, 1062 a.a., multidrug efflux RND transporter permease subunit OqxB28 from Azospirillum sp. SherDot2

Subject, 1071 a.a., RND efflux system, inner membrane transporter CmeB from Xanthomonas campestris pv. campestris strain 8004

 Score = 1227 bits (3174), Expect = 0.0
 Identities = 643/1039 (61%), Positives = 789/1039 (75%), Gaps = 4/1039 (0%)

Query: 1    MNISKFFIDRPIFAGVLSVALFLAGAIAVFRLPISEYPEVVPPSVVVRAQFPGANPKVIA 60
            M+ S+FFIDRPIFA VLS+ +F AG IA+  LPISEYPEVVPPSV VRA +PGANPKVIA
Sbjct: 16   MDFSRFFIDRPIFAAVLSIIIFAAGLIAMPLLPISEYPEVVPPSVQVRAVYPGANPKVIA 75

Query: 61   ETVASPLEEQINGVEGMLYMQSQANSDGNLALTVTFKLGTDPDKAQQLVQNRVAQAMPRL 120
            ETVA+PLEE INGVE M+YM+S A SDG L +TVTFK GTDPD+AQ  VQNRV+QA  RL
Sbjct: 76   ETVATPLEEAINGVENMMYMKSVAGSDGVLVVTVTFKPGTDPDQAQVQVQNRVSQAQARL 135

Query: 121  PSDVQRLGVATVKSSPTLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLTRISGVGEVQVW 180
            P DV+R GV T K SPTLTMVVHL SP  +YD  YL NYA L VKD L+R+ GVG++Q++
Sbjct: 136  PEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYDSLYLSNYATLKVKDELSRLPGVGQIQIF 195

Query: 181  GAGDYAMRVWLDPGKVAQRGLTATDVVNSIREQNVQVAAGVIGASPSLPDVPMQLSINAR 240
            GAGDYAMR+WLDP KVA RGLTA+DVV +IREQNVQV+AG +GA P        LSINA+
Sbjct: 196  GAGDYAMRIWLDPDKVAARGLTASDVVAAIREQNVQVSAGQLGAEPMPNKSEFLLSINAQ 255

Query: 241  GRLKTADEFGDIVLKTGGEGGVTRLRDVARVELAAAQYGLRSLLDNKPAVALGITQTPDA 300
            GRL T +EFG+IV+++G  G + RL DVAR+EL A +Y LRS LD+K AV +G+ Q+P A
Sbjct: 256  GRLTTEEEFGNIVIRSGTSGEIVRLSDVARLELGAGKYTLRSQLDSKSAVGMGVFQSPGA 315

Query: 301  NALAISDEVRKVMAELKGDMPDGVDYSIVYDPTQFVRSSIEAVVHTLLEAVALVVLVVIV 360
            NA+ +SD VR  MAEL+   P  + +S  YDPT FVR SI+AVV TLLEAV LVVLVVI+
Sbjct: 316  NAIELSDAVRAKMAELEKQFPQDMAWSAAYDPTIFVRDSIKAVVSTLLEAVLLVVLVVIL 375

Query: 361  FLQTWRASIIPLLAVPISIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVE 420
            FLQTWRASIIPLLAVP+S+VGTF+ L   GFSIN L+LFG+VLAIGIVVDDAIVVVENVE
Sbjct: 376  FLQTWRASIIPLLAVPVSVVGTFAALYVLGFSINTLTLFGLVLAIGIVVDDAIVVVENVE 435

Query: 421  RNIASGLSARDATIRAMQEVSGPIIAIALTLVAVFVPLAAMTGLTGEFYKQFAMTIAIST 480
            RNI  GLS   A  +AM+EVSGPIIAIAL L AVFVP+A ++G+TG+FYKQFA+TIAIST
Sbjct: 436  RNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAIST 495

Query: 481  VISAFNSLTLSPALAAVLLRGHDEPQDWLTRAMNRVFGGFFRLFNRVFHRASEGYGRGVG 540
            VISA NSLTLSPALAA+LL+ HD P+D  TR ++R+FG  FR FNR F+ +S  Y   V 
Sbjct: 496  VISAINSLTLSPALAAMLLKAHDAPKDGPTRLIDRLFGWIFRPFNRFFNTSSHKYQGAVS 555

Query: 541  GVVRRKGVMLAVYALLIGATVLLGRSVPSGFVPMQDKEYLISFAQLPNGASLDRTEAVIR 600
              + ++G++  VY LL+  T ++ + VP GF+P QDK YLI+ A+LP GASL+RT  VI 
Sbjct: 556  RALGKRGMVFMVYLLLLVGTGVMFKLVPGGFIPTQDKLYLIAGAKLPEGASLERTSEVIS 615

Query: 601  EMTDIALKRPGVQSAVAFPGLSVNGFTNSSSAGIVFVTLKPFAERKDPSLSAGAIAMDLQ 660
            +++DIAL+  GV  AVAFPGL+   FTN+ + G +F+TLKPF+ER   S +A  I  ++ 
Sbjct: 616  QISDIALQTEGVAHAVAFPGLNPLQFTNTPNTGTLFLTLKPFSER---SRTAAQINAEIN 672

Query: 661  QRYAGLKEAFVAIFPPPPVMGLGQLGGFKMQLEDRGNLGYEALSDAVNAFVKRAAQTPEL 720
             R + +++ F   F PPP++GLGQ  G+ + ++DR  LGY  L  AV A     +QTP +
Sbjct: 673  ARISQIEKGFAFAFMPPPILGLGQGSGYSLYIQDRAGLGYGQLQTAVTAMSGAISQTPGM 732

Query: 721  GPTFSAYQINVPQLDVDLDRVKAKQLGVNVADVFDTMQIYLGSLYVNDFNAFGRVYQVRV 780
                  YQ NVPQLD  +DR KAK  GV + +VFDT+Q YLGS Y+NDFN FGR YQV  
Sbjct: 733  QFPIGTYQANVPQLDAKVDRDKAKAQGVPLTNVFDTLQTYLGSAYINDFNRFGRTYQVIA 792

Query: 781  QADAPFRDTADDIGVLKTRNAAGTMVPLSSLVTVQPGYGPEMVVRYNGFTAADVNG-GPA 839
            QAD  FRD+ +DI  L+TRN  G MVP+ S+VT+   YGP+ V+RYNG+ AAD+ G    
Sbjct: 793  QADGQFRDSVEDIANLRTRNDRGQMVPIGSMVTLGQTYGPDPVIRYNGYPAADLIGEADT 852

Query: 840  PGFSSGQAEAAAERIAAEVLPRGVKLEWTDLTYQKILVGNAGLWVFPISVLLVFLVLAAQ 899
               SS QA      +A +VLP G+ +EWTDL+YQ+ + GN+ L VFP++VLL FLVLAA 
Sbjct: 853  RVLSSAQAMQTLAGMAPKVLPNGMNIEWTDLSYQQSIQGNSALIVFPMAVLLAFLVLAAL 912

Query: 900  YESLTLPLAILLIVPMSVLSALFGVWLTGGDNNIFTQIGFMVLVGLSAKNAILIVEFARE 959
            YES TLPLA++LIVPM++LSALFGVWLTGGDNN+F Q+G +VL+GL+ KNAILIVEFARE
Sbjct: 913  YESWTLPLAVILIVPMTLLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE 972

Query: 960  LEHEGRGVVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGAEMRHAMGVAVFAGMI 1019
            LE  G+G+V+AA+EA RLRLRPI+MTSIAFI G VPLV   GAGAE+R   G+ VFAGM+
Sbjct: 973  LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGML 1032

Query: 1020 GVTLFGLVLTPVFYVLLRK 1038
            GVTLFGL LTPVFYV LRK
Sbjct: 1033 GVTLFGLFLTPVFYVALRK 1051



 Score = 58.9 bits (141), Expect = 2e-12
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 888  SVLLVFLVLAAQYESLTLPLAILLIVPMSVLSALFGVWLTGGDNNIFTQIGFMVLVGLSA 947
            +VLLV LV+    ++    +  LL VP+SV+     +++ G   N  T  G ++ +G+  
Sbjct: 365  AVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYVLGFSINTLTLFGLVLAIGIVV 424

Query: 948  KNAILIVEFARELEHEGRGVVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGAEMR 1007
             +AI++VE       EG   + AA +A R    PI+  ++      VP+   SG   +  
Sbjct: 425  DDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFY 484

Query: 1008 HAMGVAVFAGMIGVTLFGLVLTPVFYVLLRKLAGAERRVDAPAEG 1052
                V +    +   +  L L+P    +L K        DAP +G
Sbjct: 485  KQFAVTIAISTVISAINSLTLSPALAAMLLKAH------DAPKDG 523