Pairwise Alignments

Query, 522 a.a., RNA polymerase sigma-54 factor 2 from Azospirillum sp. SherDot2

Subject, 485 a.a., RNA polymerase factor sigma-54 from Rhodanobacter sp000427505 FW510-R12

 Score =  285 bits (730), Expect = 2e-81
 Identities = 197/527 (37%), Positives = 275/527 (52%), Gaps = 67/527 (12%)

Query: 1   MTPQLQQAIKLLQLSNIELSDFVDREIEQNPLLERDGGSADGGSDPVGPADG---SDAPG 57
           +TPQLQQAI+LLQLS +EL   + +  E NPLLE     A+   D     D    SD P 
Sbjct: 15  LTPQLQQAIRLLQLSQLELEAELRQIAESNPLLE----FAEEVEDEEATEDAVVESDYPS 70

Query: 58  GLDGPGGMAANGLSADGLNGRDDGPALPTGDGRTRDTVEMTSSDTMTSSSESPLDTDFEN 117
                       + A      DDG      DG                 +E+P+D    +
Sbjct: 71  ------------VEAVAATAGDDGETSDWSDGGV---------------AETPIDFSSNS 103

Query: 118 VYGDDRFSDGSDGGSEVYGSYGERGGRSGFEDDDSNLEATLTSEKNLRDHLTEQLKIDLP 177
           V        GS+ GS      G RG        D + E    + + L+ HL  QL +   
Sbjct: 104 V--------GSNSGS------GTRG--------DEDFEPQNAAPETLQQHLLWQLNLASF 141

Query: 178 DLGDQLIGLALIDMLDEAGWLI-GFDA--QAMAEQLGCGAERVERVLTACQRFDPPGIFA 234
                LI   LID L+ AG+L  G +A   A+          +E V    Q FDP G+ +
Sbjct: 142 TPRQHLIATVLIDALNPAGYLAEGLEAILAALPAAFDASIAEIEEVRRCLQGFDPAGVAS 201

Query: 235 RSLKECLAIQLREKN----RLDPAMAALLDNLELLAARNLPAIMKVCGVDAEDVADMVVD 290
             L++CL +QL + +    + D A+  +   LELLA  ++  + +    D  DVAD  V 
Sbjct: 202 LDLRDCLRVQLEQFDPDTPQRDLALRIVDTELELLARNDITRLARRLRTDENDVADAAVL 261

Query: 291 IRKLNPKPALAFDHTPAQLVTPDILMRANPGGGWLIDLNPDTLPRVLVNHRYFARISDGA 350
           IR L+P+P  A D TP + V PD+    + G  W + LNPD  PR+ +N  Y   I+  A
Sbjct: 262 IRSLDPRPGAALDATPVEYVAPDVYALRD-GTRWRVSLNPDAQPRLGLNQHYCGLIAQ-A 319

Query: 351 RNKADKEYISERFQSANWLVKSLHQRATTILKVASEIIRQQDAFFIHGVSHLRPLILRDI 410
           R + D  ++  + Q A WL+KSL  RA T+LKVA  I+R+Q AF  +G   + PL+LR++
Sbjct: 320 RGE-DASWMRGQLQEARWLIKSLESRAETLLKVAEAIVRRQSAFLDYGPEAMHPLVLREV 378

Query: 411 AEAIGMHESTVSRVTTNKFMATPRGVFELKYFFTSAIQGADGQASHSAEAVRHRIKTMID 470
           AE +GMHEST+SRVTT K++ TPRG FELKYFF+S +   DG  S SA A++  ++ +ID
Sbjct: 379 AEEVGMHESTISRVTTRKYLHTPRGTFELKYFFSSGVSTEDG-GSASATAIQAMLRKLID 437

Query: 471 AEKPDDVLSDDKLVEILRAEGIDIARRTVAKYREAMKIPSSVQRRRA 517
           AE     LSD  + E L+ +GI +ARRTVAKYRE ++IP+S +R+RA
Sbjct: 438 AEDVRKPLSDLAIAEELQRKGIQVARRTVAKYREGLRIPTSSERQRA 484