Pairwise Alignments

Query, 536 a.a., putative D,D-dipeptide-binding periplasmic protein DdpA from Azospirillum sp. SherDot2

Subject, 535 a.a., dipeptide ABC transporter substrate-binding protein DppA from Escherichia coli Nissle 1917

 Score =  174 bits (442), Expect = 6e-48
 Identities = 138/488 (28%), Positives = 221/488 (45%), Gaps = 35/488 (7%)

Query: 58  SGAEYSAQ---VYDRLIHFDVNDVSKIEGEAAESWTVSPDGKTFTFKIRDGIAFHSGNP- 113
           SG  Y A    +Y+RL+ F +     I G  AE W VS DGKT+TF +R G+ +H     
Sbjct: 49  SGTTYDASSVPLYNRLVEFKIGTTEVIPG-LAEKWEVSEDGKTYTFHLRKGVKWHDNKEF 107

Query: 114 -----MTAEDVAWSFSRAV-------KMNKGPAFILTQFGLTPENVDQMVRATDPKTLVF 161
                + A+DV +SF R         K++ G        GL PE + + V+  D  T+ F
Sbjct: 108 KPTRELNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGL-PELISE-VKKVDDNTVQF 165

Query: 162 TTDKVYAPTFVLYCLTADVASIVDSKLVKGKEKDGDFGAGWLKTNSAGSGPFILKQWKAS 221
              +  AP   L  L  D ASI+  +      K G      L  N  G+GPF L+Q++  
Sbjct: 166 VLTRPEAP--FLADLAMDFASILSKEYADAMMKAGT--PEKLDLNPIGTGPFQLQQYQKD 221

Query: 222 ELLTFDANPKYWRGAPKLKRVLIRHIPEPATQRLLLEKGDVDVARNLKPEQFEPLKSSDA 281
             + + A   YW   PK+  ++    P+ + +   L+K +  V     P     +K   +
Sbjct: 222 SRIRYKAFDGYWGTKPKIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKS 281

Query: 282 IRLVQAPKGTLWYLSLNQKNATLAKPEVREAFKYLVDYDGMAGSIMNGIGAVHQAFLPKG 341
           I L++ P   + YLS N +   L   +VR+A  Y V+ D +  ++  G G   +  +P  
Sbjct: 282 INLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPT 341

Query: 342 FLGAVND-NPYKYDPAKAKELLAKAGYPEGFTVSMDV----RNTNP-TQDMAQAIQASAA 395
             G  +D   Y YDP KAK LL +AG  +GF++ +      R  NP  + MA+ IQA  A
Sbjct: 342 MWGYNDDVQDYTYDPEKAKALLKEAGLEKGFSIDLWAMPVQRPYNPNARRMAEMIQADWA 401

Query: 396 KAGIKIEIIPGDGKQVLTKYRARNHELMIQQWGADYQDPNSNADTFASNPDNSDNAKSKP 455
           K G++ +I+  +  + L + +   H+ ++  W  D  DP++   T  S   +   +    
Sbjct: 402 KVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSCAASEQGSNYSK 461

Query: 456 LAWRNAWDIPELTRKTAAAIEERDGAKRAQMYEELQRSVLADSPFVIMFQQTEMVAERKS 515
             ++   D+ +  R T       D  KR ++Y++ Q  +   +P +I+   T     RK 
Sbjct: 462 WCYKPFEDLIQPARAT------DDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKE 515

Query: 516 VSGLVWGP 523
           V G V  P
Sbjct: 516 VKGYVVDP 523