Pairwise Alignments

Query, 498 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Azospirillum sp. SherDot2

Subject, 486 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Herbaspirillum seropedicae SmR1

 Score =  197 bits (501), Expect = 7e-55
 Identities = 159/491 (32%), Positives = 235/491 (47%), Gaps = 43/491 (8%)

Query: 9   TADDAAVA--TGGRLSGPSAWTATG-VAIDSRKVAAGDLFVAIRGPNFDGHAFIGAALAA 65
           TA+ AA A    G ++ P+   A   V  DSR V  G++FVA+RG  FD H F+ A    
Sbjct: 15  TAEAAASAHTVPGVVNAPAGLLALNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVADQ 74

Query: 66  GAAAAMVDHLPDGIPEGAPLLIAPSDTLESMAALGVVA---RARCGARFVGVTGSVGKTG 122
           GAAA +V+ +P G+    P ++ P    ++ AALG +A   R +     +GVTGS GKT 
Sbjct: 75  GAAAVVVERVPPGL--ALPAIVVP----DTRAALGQIAHGWRMQRQIPVIGVTGSNGKTT 128

Query: 123 TKETLRHVLSA---QGATYANEGSLNNHWGVPLSLARLPADSRYGVFELGMNHAGELGPL 179
            KE +  +L+A   +       G+ NN  GVPL+L RL A  +  V E+GMNH GE+  L
Sbjct: 129 VKEMIATILAAAFGEEGYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEIAVL 188

Query: 180 SRQVRPHVAIVTTIEAVHLEFFSGVEAIADAKAEIFEGMDAGGIAVLNRDNG--QYARLA 237
           SR   P + +V   +  H EF + VEA+A     +   + A G+AV   D+      R  
Sbjct: 189 SRIAAPTLGLVNNAQREHQEFMATVEAVARENGAVIRHLPADGVAVFPADDDFTPLWREE 248

Query: 238 AAARRQGLTDIWSFGAHEEADARLVDCSLHATC--SAVTAMIRGERV-----QYCLSQPG 290
           A ARR     + SFG   +AD   V  S  AT   S +   ++G  V     +  L+  G
Sbjct: 249 AGARR-----VLSFGLSAQAD---VSASYQATAFGSTLQVAVKGLAVPPAQFKVELAAVG 300

Query: 291 RHWVMNSLAVLLAVKALGADVASAARSLSSLPPVKGRGTRKRIQLPQGAFTLIDESYNAS 350
            H V N+LA        G  + +  R L S  PV GR  RK  +   GA  +ID++YNA+
Sbjct: 301 EHNVRNALAAAACALGAGIAIEAVVRGLESFAPVNGRLQRKEAR--SGAL-VIDDTYNAN 357

Query: 351 PAAMAATLEVLGKIDPGAGGRRIAVLGDMRELGERADALHIGLAEPLRAANVDAVYACG- 409
           P ++ A ++VL  I     G R+ VLGDM E+G++    H  +    R+  +   +  G 
Sbjct: 358 PDSVRAAIDVLAAI----AGPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGE 413

Query: 410 --PHMKTLFDRLPAAMRGA-WTETSVELAPIVTGTVKGGDVIMVKGSLGSRTGLIVDALA 466
              H  T +   P  +  A   +    L   V      G  ++VKGS   +   +V  L 
Sbjct: 414 LTKHAVTAYGATPQGVAQALHFDDIAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLV 473

Query: 467 ALDSGRESEDK 477
            ++S  + + +
Sbjct: 474 NVESPTQHQQE 484