Pairwise Alignments

Query, 501 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 434 a.a., PAC motif:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  252 bits (644), Expect = 2e-71
 Identities = 150/368 (40%), Positives = 210/368 (57%), Gaps = 36/368 (9%)

Query: 18  LLGRHAGVGLWDAVIHNGDPMHAQSRWHWSPEFRRLVGFGHDDTAGFPDKVGSWADRLHP 77
           L+ R +  GLWD  +  GDP++  +R+ WS +FR L+GF  +D   FP+ + SWADRLHP
Sbjct: 86  LVNRASSEGLWDMEVVAGDPVNPNNRFWWSQQFRTLLGF--NDERDFPNVLASWADRLHP 143

Query: 78  DDAKPTFDSFMACLNDRSGRTGYDVNYRLKVKDGSYRWFRAIGGVARDSSGLALRACGSL 137
            D + + D+F   LNDRSG T Y +  RL +KDG+YRWF A G   RD+ G  LR  GSL
Sbjct: 144 QDKQASLDAFAKHLNDRSGNTPYRIKNRLAMKDGTYRWFYAQGETLRDARGTPLRVAGSL 203

Query: 138 IDIDAE------------RNELERAKLLDRHAGVGLWDAVFYNADPMHAQSRWHWSPEFR 185
            DI  E            R EL R  L D     GLWD      DP++A++ + WSP+FR
Sbjct: 204 RDIHDELERDLEHDVIITRFELAREMLSD-----GLWDMEVIAGDPVNARNPFWWSPQFR 258

Query: 186 RLAGFDRDDKIGFPDGVNSWADRLHPDDAKRTFDGFMACLNDRSGRTGYDVDYRLKLKDG 245
           RL GF+  ++  FPD ++SWA RLHP+D +R+   F A LNDR+G+T +D++YRLK+K G
Sbjct: 259 RLLGFETVEE--FPDVLDSWASRLHPEDKERSLTAFGAHLNDRTGKTPFDIEYRLKMKTG 316

Query: 246 TYRWFRAIGGVARDGNGLALRACGSLIDIH-GQKMAELRQAELDGERRSSIANLAESLDR 304
            YRWFRA G   R+  G+ LR  G+L+D+H   +   LR  E   ++     N+A+ L +
Sbjct: 317 EYRWFRARGQTRRNPEGVPLRVVGALVDVHLKHEQDALRDTEAQHQKNLE-ENIAQ-LTQ 374

Query: 305 EVGTAADRATANAQTVAAATEELSASISDISNRANEASGASLKASEE----ATRTNAAVE 360
            VGT         Q++A+ T  L+ + +  + RA EA       ++E    ATRT  A E
Sbjct: 375 IVGT--------IQSIASQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLATRTTEATE 426

Query: 361 ALVTSAER 368
              +   R
Sbjct: 427 QAASMMSR 434



 Score =  124 bits (310), Expect = 9e-33
 Identities = 63/134 (47%), Positives = 81/134 (60%), Gaps = 2/134 (1%)

Query: 149 RAKLLDRHAGVGLWDAVFYNADPMHAQSRWHWSPEFRRLAGFDRDDKIGFPDGVNSWADR 208
           R  L++R +  GLWD      DP++  +R+ WS +FR L GF  +D+  FP+ + SWADR
Sbjct: 83  RFDLVNRASSEGLWDMEVVAGDPVNPNNRFWWSQQFRTLLGF--NDERDFPNVLASWADR 140

Query: 209 LHPDDAKRTFDGFMACLNDRSGRTGYDVDYRLKLKDGTYRWFRAIGGVARDGNGLALRAC 268
           LHP D + + D F   LNDRSG T Y +  RL +KDGTYRWF A G   RD  G  LR  
Sbjct: 141 LHPQDKQASLDAFAKHLNDRSGNTPYRIKNRLAMKDGTYRWFYAQGETLRDARGTPLRVA 200

Query: 269 GSLIDIHGQKMAEL 282
           GSL DIH +   +L
Sbjct: 201 GSLRDIHDELERDL 214



 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 2/87 (2%)

Query: 346 LKASEEATRTNAAVEA--LVTSAERIGAITKLINSIASQTNLLALNATIEAARAGEAGRG 403
           LK  ++A R   A     L  +  ++  I   I SIASQTNLLALNA IEAARAGEAGRG
Sbjct: 347 LKHEQDALRDTEAQHQKNLEENIAQLTQIVGTIQSIASQTNLLALNAAIEAARAGEAGRG 406

Query: 404 FAVVANEVKSLAQQSGSAADDIAAQIA 430
           FAVVA+EV+ LA ++  A +  A+ ++
Sbjct: 407 FAVVADEVRKLATRTTEATEQAASMMS 433