Pairwise Alignments

Query, 340 a.a., Ribosomal RNA small subunit methyltransferase C from Azospirillum sp. SherDot2

Subject, 353 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (279), Expect = 2e-29
 Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 8/270 (2%)

Query: 70  PAEGPFDGAVLRLPRGWAGFEMALHALASRLAPGAPLWIAGGNDEGVTSAAKHLDGLTEE 129
           P +  ++  ++  P+         +  A  L P   L + G N  G+ S  K L      
Sbjct: 83  PHQNKYNTVIVYFPKAKPLAPYLFNLAAQHLVPNGQLLVVGENKGGIKSLVKLLPNYFAA 142

Query: 130 PETLIIKRRARLLLTQRTDAPAKGALEDWRQTVTLTLPDRTLELVSYPGLFAHGHLDAGT 189
              L   R + L  +   D   +  L DW     L+ P   + + +  G+F+  HLD GT
Sbjct: 143 GVKLDNARHSLLFGSSLIDTAPEITLSDWASQYQLSTPQGNITICNLVGVFSEKHLDQGT 202

Query: 190 ECLLKVLPEVAAGTRVLDFGCGAGVIARAVRERQPDAPLTLLDIDAVALHAAR----QNV 245
           E LL  LP ++   RVLDFGCGAGVIA  + + QP   L  +DI+A+AL +       N 
Sbjct: 203 ELLLSHLPTLSG--RVLDFGCGAGVIAATLLKAQPTLSLECIDINAMALASCELTLAANG 260

Query: 246 PDAELVLSDGLAGLGTRERFGLILSNPPLHRGKDEDFGMLDALVAGTKQYLKLRGTLVAV 305
             A++  SDGLA   T  +F  I+SNPP H G      +    VA + + L+ +G    V
Sbjct: 261 MMAKVYPSDGLA--QTSGKFDGIISNPPFHDGLASTTNIAQRFVADSAKQLQSKGIWQIV 318

Query: 306 TQRTAGVGKLFKAAFGHSDMLMETTQFQVW 335
             R         A FG   +  E  +++++
Sbjct: 319 ANRHLPYSDTIAAEFGQLTVPAENNKYKLY 348