Pairwise Alignments

Query, 1213 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1194 a.a., transcription-repair coupling factor from Rhodanobacter sp. FW510-T8

 Score =  764 bits (1974), Expect = 0.0
 Identities = 464/1191 (38%), Positives = 662/1191 (55%), Gaps = 87/1191 (7%)

Query: 25   ARILAELAQKAGGYGLLHVALDDTRCALLAEALAFFAPKLEVLTFPAWDCLPYDRVSPNG 84
            A +LAE A+   G  L+ VA D  R   L   L  FA  L VL FP W+ LPYD  SP+ 
Sbjct: 29   ALLLAEAARTHEGL-LVVVARDTQRAQALEAELKIFAGGLPVLHFPDWETLPYDVFSPHP 87

Query: 85   GIVARRIDTLTRLIARRDAASNRDGLAPLIVLTTVNAVVQKVPPRSAFKNAVFSAKLRDR 144
             IV++RI TL RL            +   +++  V  ++Q++ PRS    +        +
Sbjct: 88   EIVSQRIATLYRL----------PNVKRGVLVVPVATLMQRIAPRSHITGSGLVLAKGQK 137

Query: 145  IDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDLFPPGTEEPLRLDLFGDELEGVRAF 204
            +DL   QR L  +GY     V EPG+FAVRG ++D+FP GT EP R++LF DE++ +R+F
Sbjct: 138  LDLAGEQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPYRIELFDDEVDSIRSF 197

Query: 205  DPMTQRTTDKRDSVELKPMSEVFLDDAGIARFRSGYRELFGAVTDDDPLYEAISAGRSYG 264
            DP TQR+  + D V+L P  E  L +     FR   RE F       PLY+ +  G + G
Sbjct: 198  DPETQRSQQQVDKVDLLPAREFPLTEEAAKEFRGNLRERFPIDVRRCPLYQDMKEGVTPG 257

Query: 265  GMEHWLPLFHESMDTVLDYLPR-GIVSLDHQANEARDARIAQVVDFHASRDGMMTIEKRA 323
            G+E++LPLF     T+ DYL    +  L   A EA D   AQ  + +  R          
Sbjct: 258  GIEYYLPLFFPQTATLFDYLADDALFVLGEGAGEAADQFWAQTAERYDQR---------- 307

Query: 324  GSPVYKPV-PVASMFLDGIGWDALLAERAVAQLQIFSTPPGIKGTVDAGGKRGHDFAEER 382
               + +PV P A ++L        L E+   +L++     G +  VD+G +   +    R
Sbjct: 308  AHDIERPVLPPAELYLPA----EKLREQLNKRLRVEVVDAGHEHAVDSGTQPAPELPLNR 363

Query: 383  NRPDVNVFDAVKDHIRA-LRADGRRVLIAGYSAGSRDRLSNVLA---------------- 425
               +          +R  L +   RVLIA  SAG R+ L   LA                
Sbjct: 364  KGEEPGT------SLRYFLTSYPGRVLIAADSAGRREALIETLAAAGLKPQNVEGWSTFL 417

Query: 426  ------------------------DHGIP-GLEPAESMEDVRRFDRGIIGTIVLGMEHGF 460
                                      GIP G  P     +  +++       + G+E GF
Sbjct: 418  LPLPAGGGREGVARTGEEAKAPLPPQGIPFGHNPPLQAGEEAKYEGPKFAITIAGLEQGF 477

Query: 461  --TSADLAVITEQDILGDRLVRPAKKKRKAAN------FIAEHSALHEGDIVVHMDHGIG 512
              T   + V+TE+++ G+R+     +KR+          I + + L  G  +VH+DHG+G
Sbjct: 478  ALTKPAITVLTERELYGERVRSERDRKRRRGTARDPEAIIRDLTELTPGAPIVHVDHGVG 537

Query: 513  RYDGLETLDVTGAPHDCLRLIYEGGDKLYVPVENIEVLSRY-GSEDANVQLDKLGGAGWQ 571
            RY GL ++DV G   + L + Y  GDKLYVPV  + ++SRY G+      L  LGG  W+
Sbjct: 538  RYQGLVSMDVGGMDGEFLTIEYAKGDKLYVPVAQLGLVSRYSGTAPELAPLHSLGGDAWE 597

Query: 572  GRKARVKKRLKDMAEALLKIAAERMLKKADPVLTPEGVYQEFAARFPYPETDDQLKAIED 631
              + +  ++++D+A  LL I A+R  +  + +     + +EF + FP+ ET DQ  AIE 
Sbjct: 598  RARRKAAEKVRDVAAELLAIYAQRQARGGESLPIDRQLVEEFGSTFPFEETPDQESAIEA 657

Query: 632  IFTDLGSGRPMDRLVCGDVGFGKTEVALRAAFMVAMSGKQVAVVVPTTLLARQHFRTFST 691
            +  DL + R MDR++CGDVGFGKTEVALRAAF  A +G+QVAV+VPTTLLA+QH+R F+ 
Sbjct: 658  VLNDLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGRQVAVLVPTTLLAQQHYRNFAD 717

Query: 692  RFNGLPVRVVQLSRMVTAREQTLVKKELAEGTADIVVGTHALLAKGLDFKRLGMVIVDEE 751
            RF   PVRV  LSR  + +E     K LA+G  D++VGTH LL   + F+ LG+VIVDEE
Sbjct: 718  RFADWPVRVDVLSRFKSTKEVNEALKRLADGQIDVIVGTHKLLQPDIKFRNLGLVIVDEE 777

Query: 752  QHFGVKQKERLKELRADIHVLTLTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVL 811
            Q FGV+QKE+LK+LRA++ +LT+TATPIPRTL MA++G+R+LSLIATPP  R AVRTF+ 
Sbjct: 778  QRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLSLIATPPAHRSAVRTFIS 837

Query: 812  PYDPVVIREAILREHYRGGQSFYVCPRVEDLAKVAERVRELVPEVKIVTAHGQMPASELE 871
             +DP  IREA+ RE  RGGQ +++   V+ + +    +  LVP+ +I  AHGQMP  ELE
Sbjct: 838  AWDPATIREALQRELSRGGQVYFLHNEVQSIERTVRELEGLVPDARIRVAHGQMPERELE 897

Query: 872  DVMTAFDEGKFEVLLATNIIESGLDIPNANTLIVHRADLFGLAQLYQIRGRVGRSKKRGY 931
             VM  F   +F VL+ T IIE+G+DIP ANT+I+ RAD FGLAQL+Q+RGRVGRS  R Y
Sbjct: 898  GVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLAQLHQLRGRVGRSHHRAY 957

Query: 932  AYLTYAPNKPLSGTAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGQVREVG 991
            AYL     + ++  AQ+RL  + +L+ LGAGF LA+HD++IRGAG LLG+EQSGQ++E+G
Sbjct: 958  AYLVVPDRRSITADAQKRLEALASLEELGAGFTLATHDLEIRGAGELLGDEQSGQIQEIG 1017

Query: 992  VELYQQMLEEAVASARASMQEGAVAAAAAQEWVPQINLGTPVLIPESYVPDLTVRLSLYR 1051
              LY ++L+ AV   RA           + E   ++ L  P LIP+ Y+PD+  RL+LY+
Sbjct: 1018 FGLYTELLDRAV---RALKSGKVPDFDLSSEHETEVELHLPALIPDDYLPDVHARLTLYK 1074

Query: 1052 RIADLVDRAEVDGFAAELIDRFGKLPEEVENLLDVVTIKRWCKQANIDRVDAGPKGLVLA 1111
            R+A      E+     E+IDRFG LP+  + L  V ++K       I ++D G  G  + 
Sbjct: 1075 RVASARSEDELRDLQVEMIDRFGLLPDSTKQLFAVASLKLMATPLGIRKLDFGANGGRIV 1134

Query: 1112 FHDNFYAEPAKLLTYIAQHLTLMKLRPDHKLVYIREWPDPAARVRSVQKLV 1162
            F +    +P  ++  I Q   + KL    KL  I + P  + R+RS Q+++
Sbjct: 1135 FREKPEVDPMTIIKLIQQLPRVYKLDGQDKLKVILDLPGASERIRSAQEVL 1185