Pairwise Alignments

Query, 259 a.a., Ribosomal RNA small subunit methyltransferase E from Azospirillum sp. SherDot2

Subject, 239 a.a., 16S rRNA methyltransferase from Pseudomonas fluorescens FW300-N2C3

 Score =  114 bits (284), Expect = 2e-30
 Identities = 89/252 (35%), Positives = 132/252 (52%), Gaps = 31/252 (12%)

Query: 7   TRLYVDSPLAEGQSVGLDHE----RAHFLRHVLRLDRGDSVAVFNGRDGEWRAVIDGFGK 62
           +R ++D+PL+ G     DHE    +AH++  VLR+  GD+V VF+G   E+R  +   GK
Sbjct: 4   SRFFIDAPLSLG-----DHELPEAQAHYIGRVLRMAEGDAVQVFDGSGQEFRGTLAEVGK 58

Query: 63  GWCSLTVAEQRREQDTTPDLWLVFAPLKKG-RIDFVAEKATEMGVSRLWPVFTRRTDPNR 121
               + + EQ   Q  +P    +   L +G R+D+  +KATE+GVS + P+F+ R +   
Sbjct: 59  KRVRVQLDEQFAGQLESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSERCE--- 115

Query: 122 VNLDRLRAN---------AVEAAEQCERLSVPEMGEAVPLDRALAGWPADRRLYLCAEAG 172
           V L   RA+         A+ A EQC R +VP +   + L   L    A+ +L L     
Sbjct: 116 VRLKDERADKRLLHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQAEAELKLVL----- 170

Query: 173 AARPVAE-VLRDAPPGPAALLVGPEGGFDQSELDELAKLPFVVPVGLGPRILRADTAVVA 231
              PVAE ++    P   A L+GPEGG   +E+++ AK        LGPR+LR +TA V 
Sbjct: 171 --HPVAEPLVSHEKPSTLAFLIGPEGGLSDAEVEQ-AKTAGYQAARLGPRVLRTETAPVV 227

Query: 232 ALACWQSLAGDW 243
           ALA  Q L GD+
Sbjct: 228 ALAVAQQLWGDF 239