Pairwise Alignments

Query, 301 a.a., ECF RNA polymerase sigma factor SigJ from Azospirillum sp. SherDot2

Subject, 173 a.a., FIG006045: Sigma factor, ECF subfamily from Pseudomonas fluorescens FW300-N2E2

 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 14  FAGERARLRALAYRLLGSVAEAEDTLQDAWLRWS-AVAPGSVGSAPAYLTTLVTRLALDR 72
           F  +R  L     R++ + + AED LQ+ +LR + A+A  +V     ++      LALD 
Sbjct: 10  FLAQRTPLLRTLERMVSNPSTAEDLLQETYLRVTRALAERTVEHLEPFVFQTARNLALDH 69

Query: 73  LRSARVARERYYGLWLPEP--EVAGWDSAPEDGMEPESVPLAMLLLLERLAPDQRAVFVL 130
           LR+ R+          PE    V    S+ ED    + +   + + L+ L+  Q+ +F+L
Sbjct: 70  LRARRIQSRTLLDDVPPEVVHNVVAPQSSAEDAAHAQQLLERLNVSLQALSSRQQQIFIL 129

Query: 131 REAMDLDYAEIAAMLGKSVEACRQIMR 157
                  Y +IA  LG S+   ++ ++
Sbjct: 130 SRLHGHSYQQIAERLGVSLSTVQKELK 156