Pairwise Alignments

Query, 301 a.a., ECF RNA polymerase sigma factor SigJ from Azospirillum sp. SherDot2

Subject, 187 a.a., Sigma-70 region 2 from Pseudomonas syringae pv. syringae B728a

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 3/147 (2%)

Query: 14  FAGERARLRALAYRLLGSVAEAEDTLQDAWLRWS-AVAPGSVGSAPAYLTTLVTRLALDR 72
           F  +R  L     R++G+ + AED LQ+ WLR S A+    V     ++      LALD 
Sbjct: 25  FLAQRPVLLRTLQRMVGNQSTAEDLLQETWLRVSRALTEHPVAHLEPFVFQTARNLALDH 84

Query: 73  LRSARVARERYYGLWLPE--PEVAGWDSAPEDGMEPESVPLAMLLLLERLAPDQRAVFVL 130
           LR+ R+          P     V     +PED    + +   +   L  L+P Q+ +F L
Sbjct: 85  LRARRIHGRTMLEDVSPARLENVVAQLGSPEDAAHAKRLLENLSASLSTLSPRQQKIFTL 144

Query: 131 REAMDLDYAEIAAMLGKSVEACRQIMR 157
                  Y EIA  L  S    ++ ++
Sbjct: 145 SRLDGRSYLEIAEQLQVSASTVQKELK 171