Pairwise Alignments

Query, 301 a.a., ECF RNA polymerase sigma factor SigJ from Azospirillum sp. SherDot2

Subject, 301 a.a., RNA polymerase sigma factor SigJ from Rhodanobacter denitrificans MT42

 Score =  199 bits (507), Expect = 5e-56
 Identities = 125/296 (42%), Positives = 166/296 (56%), Gaps = 10/296 (3%)

Query: 6   DPDTALAAFAGERARLRALAYRLLGSVAEAEDTLQDAWLRWSAVAPGSVGSAPAYLTTLV 65
           DP TAL  F   R RL  LAYR+LG+ ++AED L DAWLRW A    ++    A+L T+ 
Sbjct: 2   DPQTAL--FQQHRQRLFGLAYRMLGTPSDAEDVLHDAWLRWHAQDTDALDDPEAWLVTVT 59

Query: 66  TRLALDRLRSARVARERYYGLWLPEPEVAGWDSAPEDGMEPESVPLAMLLLLERLAPDQR 125
           TR+ALDRLR A+  R  Y G WLPEP     D         ES+ L  LLLLERL+ ++R
Sbjct: 60  TRIALDRLRRAKTERAHYAGPWLPEPLTVDADQPEAQLERAESLTLTFLLLLERLSAEER 119

Query: 126 AVFVLREAMDLDYAEIAAMLGKSVEACRQIMRRARARLAEPAAWGQPANAADAGRRLADA 185
           A F+LRE  D  +AE AAML  S +ACRQ + RA+ RL E     Q     D  RRL + 
Sbjct: 120 AAFLLREVFDYSHAETAAMLEISEDACRQRVHRAKQRLREDRP-RQAMPNIDTQRRLLER 178

Query: 186 FAEASVRRDYAAIVALLSDDAQWLSDGGGMVRTAVNPLFGADRIARFL--IGVQRKRGVS 243
           F +A  + D   + AL ++DA  +SDGGG+ R  ++PL GA+R+AR    I +Q++R   
Sbjct: 179 FMQALQQPDMPTLRALFAEDAMSVSDGGGLARAILHPLHGAERLARLYMQIALQQQRHGG 238

Query: 244 FGFIPVRVNGGPGLLADLGGAFRSVLAFDMAPCGDTGNRILRVYQIANPEKLERVA 299
             +   ++NG P L    G    S    D     D G RI  V+ + +P KL R+A
Sbjct: 239 VRYEIHQLNGMPALFGWHGDTLISASWID-----DDGERITAVHALRHPGKLARLA 289