Pairwise Alignments

Query, 301 a.a., ECF RNA polymerase sigma factor SigJ from Azospirillum sp. SherDot2

Subject, 166 a.a., sigma factor from Agrobacterium fabrum C58

 Score = 52.4 bits (124), Expect = 7e-12
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 15/161 (9%)

Query: 4   LADPDTALAAFAGERARLRALAYRLLGSVAEAEDTLQDAWLRWSAVAPGSVGSAPAYLTT 63
           + + D    A+   R  L   A  +LGS A+AED +Q+A+L++     G+  +  +YL  
Sbjct: 3   IREDDKRYNAYVAHRVDLIKYATLILGSRADAEDVVQEAFLKFVPEGSGNPTNLKSYLFR 62

Query: 64  LVTRLALD-RLRSARVARERYYGLWLPEPEVAGWDSAPEDGMEPESVPL------AMLLL 116
           +V  LALD R RS +  RER        P+   +   P+D   PE   L       M  +
Sbjct: 63  IVRNLALDNRRRSRQDLRER--------PDDTPFWGMPQDNGTPEEHALFCDEVRQMQTI 114

Query: 117 LERLAPDQRAVFVLREAMDLDYAEIAAMLGKSVEACRQIMR 157
           L  L    R    +      +  EIA  LG SV    ++++
Sbjct: 115 LAGLPVQARVALEMHRFGGYNMEEIARHLGVSVAGAHRLIK 155