Pairwise Alignments

Query, 551 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 641 a.a., terminase from Escherichia coli ECRC100

 Score =  147 bits (371), Expect = 1e-39
 Identities = 144/508 (28%), Positives = 215/508 (42%), Gaps = 61/508 (12%)

Query: 2   LRDTPVLKPLMRPTRKGEKQDNATFYQLSNGASVRVVGAASDDAFRRYSARFLFADEI-- 59
           +RD P L  L     K  + +  T  + +NG     +G  +   +R  S      DE+  
Sbjct: 123 IRDIPSLLALAPWYGKKHRDNTLTMKRFTNGRGFWCLGGKAAKNYREKSVDVAGYDELAA 182

Query: 60  -DGDGWTPGAKT-QGDKLKLFWTRGETFWNRKQVRGSTPLLYETSRVWKLWLASDQ-RRY 116
            D D    G+ T  GDK      R E     K +RGSTP +  T ++ +    S    R+
Sbjct: 183 FDEDIEQEGSPTFLGDK------RIEGSVWPKSIRGSTPKVRGTCQIERAASESPHFMRF 236

Query: 117 FVPCPQCSDAAGQLDGWQYLDWGGPDVPHGLKWSLDAEGTLDKVWYVGTC---GCIVEER 173
            V CP C +        QYL +G  + P GLKW+ D   +   V+Y+  C    C++ ++
Sbjct: 237 HVACPHCGEE-------QYLKFGDKETPFGLKWTPDDPSS---VFYL--CEHNACVIRQQ 284

Query: 174 HKAWMDAN------GEWRPTA---------RAKVPGHVGMHLWTGMSLNPNAAWTVIVQE 218
              + DA       G W               + P  V  H+WT  S  P   W  IV++
Sbjct: 285 ELDFTDARYICEKTGIWTRDGILWFSSSGEEIEPPDSVTFHIWTAYS--PFTTWVQIVKD 342

Query: 219 WLEAQADPASLVQPFMNLRLGRPYRAIYGQEVKSSSFIDRMEPYPAEVPAGVEFITVGVD 278
           W++ + D     + F+N  LG  + A  G+   +    +R E Y A VP  V ++T G+D
Sbjct: 343 WMKTKGDTGKR-KTFVNTTLGETWEAKIGERPDAEVMAERKEHYSASVPDRVAYLTAGID 401

Query: 279 VQSGKVNPRLEASVYGWGRGLEVWLIGHFVLAGDPAKGEVWAALDEGVLLRRFRKPDGTT 338
            Q      R E  V+GWG G E WLI   ++ G     +    +DE +  + + + +G  
Sbjct: 402 SQL----DRYEMRVWGWGPGEESWLIDRQIIMGRHDDEQTLLRVDEAI-NKTYTRRNGAE 456

Query: 339 LDVRATCIDSGGHHTQEVYAFANKRRSRRVWAIKGRSESRGQRAKVWPRKPSSKLGHVWY 398
           + V   C D+GG     VY  + K    RV  IKG S   G+     PRK  +K G    
Sbjct: 457 MSVSRICWDTGGIDPTIVYERSKKHGLFRVIPIKGAS-VYGKPVASMPRK-RNKNGVYLT 514

Query: 399 MIGGNAARDWAYGSLAVDKIG----PRHVHFPQAAIDGARELDDEFFAQLTREKLIVP-- 452
            IG + A++  Y    +   G    P  VHFP    +     D     QLT E+ +    
Sbjct: 515 EIGTDTAKEQIYNRFTLTPEGDEPLPGAVHFP----NNPDIFDLTEAQQLTAEEQVEKWV 570

Query: 453 RGQQYTVWVKPSEAHEAGVCFVYAYAAV 480
            G++  +W      +EA  CFVYA AA+
Sbjct: 571 DGRKKILWDSKKRRNEALDCFVYALAAL 598