Pairwise Alignments

Query, 1044 a.a., RND multidrug efflux transporter from Agrobacterium fabrum C58

Subject, 1033 a.a., acriflavine resistance protein B from Herbaspirillum seropedicae SmR1

 Score = 1184 bits (3063), Expect = 0.0
 Identities = 600/1023 (58%), Positives = 776/1023 (75%), Gaps = 1/1023 (0%)

Query: 1    MARFFIDRPIFAWVVAIFIMLAGLLAIPMLPIAQYPNVAPPQISIGTNYPGASPEDIYQS 60
            M RFFIDRPIFAWVVA+FI+L G++A+  LPIA+YP+VAPP +SI   YPGA+P+ +   
Sbjct: 1    MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60

Query: 61   VTRPIEEELNGVPGLIYFESTSESSGRISINVTFEPGTNIGEAQVEVQNRIARVEPRLPR 120
            V   IE EL+GV  L+YFES++++SG   I+VTF+PGT+   AQV+VQN++  +E RLP+
Sbjct: 61   VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120

Query: 121  SVTQQGLRVEQAGTSFLMMVALTSVDGNTDAIGLGDYLSRNVLGELRRVPGVGSAQLFAT 180
            +V Q G+ VE A +SFL+MV+LTSVDG  D + L DYL+RN++ ELRR+ GVG  QLF  
Sbjct: 121  TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180

Query: 181  QRSMRIWMDPDKMLGLSLTSDDVINAIQAQNSQVAAGRIGASPNPVGQQISATVNVQGQL 240
            +++MRIW+DP K+    LT  D+  AI  QN+Q+A GR+G +P   GQQI+  + VQGQL
Sbjct: 181  EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240

Query: 241  TSPEEFGSIVLRANPDGSSVRLRDVARVEVGGESYNFSSRLNGKPSAAIGVQLSPTANAM 300
             SP +F +IVL+A  DGS V L DVARVE+G +SY F++R NGKP+    VQLSP ANA+
Sbjct: 241  QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300

Query: 301  QTSEGVRATMEELSRYFPQGIEYEIPYDTSPFVKISIEKVIHTLIEAMILVFVVMFVFLQ 360
            +T+  ++A MEEL    PQG+ + +PY+T+PFVKISI+KV+ TLIEAM+LVF+VM++FLQ
Sbjct: 301  RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360

Query: 361  NIRYTIIPTLVVPVALLGTCAVMYVSGFSINVLTMFAMVLAIGILVDDAIVVVENVERIM 420
            N+RYT+IP +V P+ALLGT AVM ++G+S+NVLTMF MVLAIGI+VDDAIVVVENVERIM
Sbjct: 361  NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420

Query: 421  AEEHLSPKEATRKAMGQISGAIIGITLVLTAVFVPMAFFPGAVGIIYQQFSLTMVVSILF 480
            A E L P+EAT KAMG+I+GAIIGITLVLTAVF+PMA   G+VG+IY+QFS+ M VSILF
Sbjct: 421  AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480

Query: 481  SGFLALSLTPALCASFLKPIKAGHHEKKGFFGWFNRNFDKASHKYSSSVGGIIKRSGRFM 540
            S FLALSLTPALCA+ L+P+ AGHH+K+GFFG FNR F++ + +Y S++G +I R  R M
Sbjct: 481  SAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRMM 540

Query: 541  IIYAALLAGLGWAYMQLPSSFLPNEDQGYLIVDIQAPAEASTERTLQSIQQIEKIFMEEP 600
            ++YAAL   L      LPS+FLP EDQGY +   Q PA+A+TERT +++ Q E+      
Sbjct: 541  LVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKGRE 600

Query: 601  AVERVIAISGFSFSGSGQNAGLAFATLKDWSERGPEDSAAAISARINGKLWGLPDAMSFA 660
             +   +++ GF FSGSG NA +AF  LKDW ER    SAA   A       G+ D M  +
Sbjct: 601  DIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGV-DGMVMS 659

Query: 661  LSPPPIQGLGNSSGFTFRLQDRSGAGQTALSAAGAQLMAAARQSPVLAGLRIEGMPDAAQ 720
            L PP I+ LGNSSGF  RLQDR+  G  AL AA AQL+A A +S  L+G+  +G+P  A 
Sbjct: 660  LLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLPAGAS 719

Query: 721  VNLIIDREKANTFGVTFSDINATISANMGSSYVNDFPNAGRMQRVTVQAEQGQRMKTEDL 780
            V L IDR KA   GV+FS I+ T+SA MGS YVNDFPNAGRMQ+V +QA+   RM+ ED+
Sbjct: 720  VQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLEDV 779

Query: 781  LNLNVRNANGGMVPVSSFATVEWVRGPSQVVGYNGYPAIRVSGQSAPGYSSGDAIAEMER 840
            + L VRN +GGMVP++      W   P+Q+  Y G+PA+R+SG +APG +SG+A+AEMER
Sbjct: 780  MKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEMER 839

Query: 841  LARELPGGFGFEWTGQSLQEIQSGSQAPALIGLSVLFVFLLLAALYESWSIPLSVMLVVP 900
            LA++LP GF   WTGQSLQE  S +QAP L+ LS+L VFL+LAALYESWSIPLSVMLVVP
Sbjct: 840  LAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVMLVVP 899

Query: 901  LGVIGSVAAVMLRGMPNDVYFLVGLVAIIGLSAKNAILIIEFAKDLRAEGKSTYDATVEA 960
            LG++G+VAAV+LR MPNDV+F VG++ +IGLSAKNAILI+EFA+ LR+EG    +A ++A
Sbjct: 900  LGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEAAIKA 959

Query: 961  AHLRFRPILMTSLAFSLGVLPMAIASGASAASQNAIGTGVLGGMISATILAIFFVPVFFV 1020
            + LR RPILMTSLAF+LGV+P+ +ASGASA +Q AIGTGV GGM+SAT+LA+ FVPVFFV
Sbjct: 960  SVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVPVFFV 1019

Query: 1021 FVM 1023
             V+
Sbjct: 1020 LVL 1022



 Score = 76.3 bits (186), Expect = 1e-17
 Identities = 77/312 (24%), Positives = 137/312 (43%), Gaps = 13/312 (4%)

Query: 725  IDREKANTFGVTFSDINATIS---ANMGSSYVNDFPNAGRMQRVTVQAEQGQRMKTEDLL 781
            +D  K N +G+T +DI+  IS   A +    + D P     Q       QGQ        
Sbjct: 188  LDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQLQSPAQFA 247

Query: 782  NLNVR-NANGGMVPVSSFATVEW-VRGPSQVVGYNGYPAIRVSGQSAPGYSS---GDAI- 835
             + ++  A+G  V +   A VE   +  +     NG PA   + Q +PG ++     AI 
Sbjct: 248  AIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAVRTAAAIQ 307

Query: 836  AEMERLARELPGGFGFEWTGQSLQEIQSGSQ--APALIGLSVLFVFLLLAALYESWSIPL 893
            A ME L   LP G  F     +   ++   Q     LI   VL VFL++    ++    +
Sbjct: 308  ARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVL-VFLVMYLFLQNVRYTV 366

Query: 894  SVMLVVPLGVIGSVAAVMLRGMPNDVYFLVGLVAIIGLSAKNAILIIEFAKDLRA-EGKS 952
               +V P+ ++G++A + L G   +V  + G+V  IG+   +AI+++E  + + A EG  
Sbjct: 367  IPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMAHEGLG 426

Query: 953  TYDATVEAAHLRFRPILMTSLAFSLGVLPMAIASGASAASQNAIGTGVLGGMISATILAI 1012
              +AT++A       I+  +L  +   +PMA+A G+           +   ++ +  LA+
Sbjct: 427  PREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILFSAFLAL 486

Query: 1013 FFVPVFFVFVMK 1024
               P     +++
Sbjct: 487  SLTPALCATLLR 498