Pairwise Alignments

Query, 861 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 831 a.a., PAS domain-containing protein from Pseudomonas fluorescens SBW25-INTG

 Score =  280 bits (715), Expect = 3e-79
 Identities = 180/437 (41%), Positives = 247/437 (56%), Gaps = 26/437 (5%)

Query: 427 RHFRFYVNAVIDQDDEAPEEVAIVYAIEVTEQKALETQMAQTQKMNAVGTLAGGIAHDFN 486
           RH    +   + Q  +A  E       E+ E++  E  +   QKM AVG L GGIAHDFN
Sbjct: 411 RHLNENLEERVAQRTQALAEANQRLQNEMFERERAEDALRHAQKMEAVGQLTGGIAHDFN 470

Query: 487 NVLTAILLSSDHLLLQARPADPSFADLMEIK----RNANRAAVLVRQLLAFSRKQTMRPA 542
           N+LT I+ S D  L+Q   A     D+         +A+RAA L  +LLAFSR+Q++   
Sbjct: 471 NMLTGIIGSLD--LMQRYIAAGRSDDIGRFTDAAVSSAHRAAALTHRLLAFSRRQSLDLQ 528

Query: 543 VLNLTDVIGDLRMLVDRLISGTNVKLEVDYGRDLWPVKTDLSQFEQVLINLCVNARDAMP 602
            LN   ++  L  L  R   G ++ L V  G D+WPV TD SQ E  L+NL +NARDAMP
Sbjct: 529 PLNPNQLVASLEDLFRRT-KGAHITLNVQLGHDIWPVNTDASQLENALLNLVINARDAMP 587

Query: 603 DGGKITIRTRN--VDEKEIAALGRPEFPAEDMVMVEVADNGTGIPPEIMDKIFEPFFTTK 660
           DGG+I I T N  +D  +I  L      A D VM+ V DNGTG+ P+I+ K F+PFFTTK
Sbjct: 588 DGGEILIETANSYLDGTDITTL--EPVKAGDYVMLGVCDNGTGMAPKILAKAFDPFFTTK 645

Query: 661 EVGKGTGLGLSMVYGIVKQSGGYIYPESEVGKGTAFRIYLPRHVVEVVQVMGQDGEMVAA 720
            +G+GTGLGLSM+YG  +QSGG++  +SE G+GT  R+YLPR       + G   E    
Sbjct: 646 PIGQGTGLGLSMIYGFAQQSGGHVTIQSEPGQGTCVRLYLPR-------LHGTSLESNLP 698

Query: 721 PVVAAEPVKEEPLDLTGKSAVVLLVEDEEAVRRGGKRMLETRGYTVHEAGSGIEALEVME 780
           P        E PL L G++ VV  VED+ AVR     +L+  GYT H+A     AL ++E
Sbjct: 699 PHSG-----EAPLALAGEAVVV--VEDDPAVRMLVVNVLDELGYTAHQAADARTALPLLE 751

Query: 781 ELEGKVDIVVSDVVMPEMDGPSLLRELRKSYPDLKFIFVSGYAEDAFARNLPADAKFGFL 840
             + +VD++V+DV +P M+G  L    R+  P L+ +F++GYAE A  R    +     +
Sbjct: 752 S-DLRVDLLVTDVGLPGMNGRQLAEIARQHRPGLRVLFMTGYAEKAAERQGFLEDGMDMV 810

Query: 841 PKPFSLKQLAIAVREML 857
            KPFS+  LA  +R M+
Sbjct: 811 AKPFSIDLLATKIRSMI 827



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 154 GRDGYEEFRLLKPLGDDTGAGPHWYRLKGRVLKDAGGEGLHVFQIADITPEREDQERFFR 213
           G +  EE+RLL+  G        W   +GR  KD  G        A    ER+  E+  R
Sbjct: 232 GTEYAEEYRLLQADGQ-----VRWVFARGRCYKDHQGRPARFLGAALDLTERKHTEQALR 286

Query: 214 ELQNAIDYLDHA-PAGFFSASRKGEIVYLNATLSEWLGI 251
           + Q  +  + +A P        +      N+   EW G+
Sbjct: 287 QSQTELQLIINAMPVLIGYVDHEQRFRLNNSAYLEWYGM 325