Pairwise Alignments

Query, 315 a.a., tRNA pseudouridine 55 synthase from Agrobacterium fabrum C58

Subject, 316 a.a., tRNA pseudouridine(55) synthase from Enterobacter asburiae PDN3

 Score =  179 bits (455), Expect = 6e-50
 Identities = 110/319 (34%), Positives = 166/319 (52%), Gaps = 17/319 (5%)

Query: 1   MSKPRKQQHRKPKGRPISGWLILDKPLDFGSTEAVSKIKWLFNAQKAGHAGTLDPLASGM 60
           MS+PR+      +GR + G L+LDKP    S + + K+K ++NA +AGH G LDPLA+GM
Sbjct: 1   MSRPRR------RGRDVHGVLLLDKPQGASSNDVLQKVKRIYNANRAGHTGALDPLATGM 54

Query: 61  LPIALGDATKTVPYVMDGRKIYEFTVTWGEQRATDDLEGEVVESSDQRPEEQAIRDILPN 120
           LP+ LG+ATK   Y++D  K Y      G++  T D +G+VVE        + +   L +
Sbjct: 55  LPVCLGEATKFSQYLLDSDKRYRVIAKLGQRTDTSDADGQVVEERPVTFSAEQLDAALES 114

Query: 121 YTGVIMQTPPQFSAIKIAGERAYDLARDGETVEIPAREVEIHRLTLLACPDADTAHFEVE 180
           + G  MQ P  +SA+K  G++ Y+ AR G  V   AR + ++ L L    + D    EV 
Sbjct: 115 FRGDTMQVPSMYSALKYQGKKLYEYARQGIDVPREARPITVYEL-LFIRHEGDELELEVH 173

Query: 181 CGKGTYVRALARDMGRDLGCFGHISELRRTMVAPFGEDMMVPLETLTALEAIEDRDER-- 238
           C KGTY+R +  D+G  LGC  H+  LRR  V+ +  + MV LE L   E +E  + +  
Sbjct: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEQLR--ELVEQAEAQGI 231

Query: 239 --LEALDAFLIDTAEALSSLPRLIINDDQAHRLKMGNPILLRGRDAPANHPEAYATA-QG 295
              + LD  L+      +  P + +    +   K GNP+  R   AP           +G
Sbjct: 232 APADLLDPLLMPMDSPAADFPVVNLPLTSSVYFKNGNPV--RTAQAPLEGLVRVTEGDEG 289

Query: 296 KLVAIGEI-GEGEFRPKRV 313
           K + +GE+ GEG   P+R+
Sbjct: 290 KFIGMGEMDGEGRVAPRRL 308