SEED Subsystem: Isoleucine degradation in Sphingobium sp. HT1-2

Experiments:

Role Gene Name  
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) GFF1394
  GFF1580
  GFF4746
  GFF5121
3-ketoacyl-CoA thiolase (EC 2.3.1.16) GFF4928
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) No genes
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) No genes
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) No genes
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) GFF2148
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) GFF2147
Branched-chain amino acid aminotransferase (EC 2.6.1.42) GFF963
Butyrate kinase (EC 2.7.2.7) No genes
Butyryl-CoA dehydrogenase (EC 1.3.99.2) GFF1369
  GFF1373
  GFF2878
  GFF3635
  GFF4615
  GFF4882
  GFF4933
  GFF5123
  GFF925
  GFF930
  GFF932
  GFF933
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) GFF2146
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) No genes
Enoyl-CoA hydratase (EC 4.2.1.17) GFF1379
  GFF1394
  GFF1404
  GFF1408
  GFF1547
  GFF1867
  GFF2444
  GFF4618
  GFF4934
  GFF5103
  GFF5121
  GFF893
  GFF917
  GFF922
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) GFF1580
  GFF4746
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-) No genes
Predicted transcriptional regulator of leucine degradation pathway, MerR family No genes
Probable acyl-CoA dehydrogenase (EC 1.3.99.3) No genes
Transcriptional regulator BkdR of isoleucine and valine catabolism operon No genes
phosphotransbutyrylase (EC 2.3.1.19) No genes

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