SEED Subsystem: DNA Repair Base Excision in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) GFF2041
DNA polymerase I (EC 2.7.7.7) GFF2216
  GFF4854
DNA polymerase II (EC 2.7.7.7) GFF182
DNA-3-methyladenine glycosylase (EC 3.2.2.20) GFF463
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) GFF3858
Endonuclease III (EC 4.2.99.18) GFF3641
Endonuclease VIII GFF4632
Exodeoxyribonuclease I (EC 3.1.11.1) GFF3917
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) GFF374
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) GFF2989
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 GFF2100

Or select organism:

Or view this subsystem at the SEED (slow)