SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Dickeya dianthicola 67-19

Experiments:

Role Gene Name  
COG2047: Uncharacterized protein (ATP-grasp superfamily) No genes
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 HGI48_RS10090
GTP cyclohydrolase I (EC 3.5.4.16) type 1 HGI48_RS09385
GTP cyclohydrolase I (EC 3.5.4.16) type 2 No genes
Glutamine amidotransferases class-II (GATase) No genes
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) HGI48_RS07785
  HGI48_RS07790
  HGI48_RS18255
NADPH dependent preQ0 reductase No genes
NADPH dependent preQ0 reductase-like No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) No genes
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8) No genes
Permease of the drug/metabolite transporter (DMT) superfamily HGI48_RS00365
  HGI48_RS03170
  HGI48_RS08790
  HGI48_RS10635
  HGI48_RS11435
  HGI48_RS18980
Putative preQ0 transporter HGI48_RS04620
  HGI48_RS20785
Queuosine Biosynthesis QueC ATPase HGI48_RS05715
Queuosine Biosynthesis QueE Radical SAM HGI48_RS17035
Queuosine biosynthesis QueD, PTPS-I No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB HGI48_RS17370
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) HGI48_RS05525
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5 No genes
glutamyl-Q-tRNA synthetase HGI48_RS16055
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
tRNA-guanine transglycosylase (EC 2.4.2.29) HGI48_RS05530

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