SEED Subsystem: L-rhamnose utilization in Bacteroides ovatus ATCC 8483

Experiments:

Role Gene Name  
Aldehyde dehydrogenase A (EC 1.2.1.22) No genes
Alfa-L-rhamnosidase (EC 3.2.1.40) BACOVA_00285
  BACOVA_02636
  BACOVA_02833
  BACOVA_03120
  BACOVA_04126
Alternative L-rhamnose isomerase (EC 5.3.1.14) No genes
Glycoside hydrolase family 2, sugar binding No genes
L-2,4-diketo-3-deoxyrhamnonate hydrolase No genes
L-2-keto-3-deoxyrhamnonate (l-KDR) aldolase No genes
L-2-keto-3-deoxyrhamnonate-(4)-dehydrogenase No genes
L-lactate dehydrogenase (EC 1.1.2.3) No genes
L-rhamno-gamma-lactonase (EC 3.1.1.65) No genes
L-rhamnonate dehydratase (EC 4.2.1.90) No genes
L-rhamnose isomerase (EC 5.3.1.14) BACOVA_03602
L-rhamnose isomerase (EC 5.3.1.14) BACOVA_03602
L-rhamnose mutarotase BACOVA_04976
L-rhamnose operon regulatory protein RhaS No genes
L-rhamnose operon transcriptional activator RhaR No genes
L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) No genes
L-rhamnose-proton symporter BACOVA_03603
Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22) No genes
Lactaldehyde reductase (EC 1.1.1.77) BACOVA_03605
Pedicted L-rhamnose permease, NCS1 Family No genes
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF BACOVA_05263
Predicted L-rhamnose ABC transporter, ATP-binding component No genes
Predicted L-rhamnose ABC transporter, substrate-binding component No genes
Predicted L-rhamnose ABC transporter, transmembrane component 1 No genes
Predicted L-rhamnose ABC transporter, transmembrane component 2 No genes
Predicted L-rhamnose mutarotase No genes
Predicted L-rhamnose permease RhaY No genes
Predicted alpha-L-rhamnosidase BACOVA_04945
Predicted lactaldehyde dehydrogenase (EC 1.2.1.22) No genes
Predicted regulator of rhamnose oligosacchoride utilization, DeoR family No genes
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster BACOVA_02702
  BACOVA_02719
  BACOVA_04974
  BACOVA_04995
Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, small transmembrane component RhiB No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 1 No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 1 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component No genes
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) No genes
Putative beta-glucuronidase No genes
Putative unsaturated glucuronyl hydrolase No genes
Rhamnogalacturonide transporter RhiT No genes
Rhamnogalacturonides degradation protein RhiN BACOVA_02108
  BACOVA_02111
  BACOVA_02112
  BACOVA_02718
  BACOVA_03494
  BACOVA_04128
  BACOVA_04900
  BACOVA_04973
  BACOVA_04975
  BACOVA_04979
  BACOVA_05004
  BACOVA_05031
Rhamnulokinase (EC 2.7.1.5) BACOVA_03601
Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) No genes
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) BACOVA_03604
Transcriptional regulator of rhamnose utilization, AraC family BACOVA_03606
Transcriptional regulator of rhamnose utilization, DeoR family No genes
Transcriptional regulator of rhamnose utilization, GntR family No genes
Transcriptional regulator of rhamnose utilization, LacI family No genes
Transcriptional regulator of rhamnose utilization, LysR family No genes
rhamnogalacturonan acetylesterase BACOVA_00980
  BACOVA_00981
  BACOVA_02693
  BACOVA_03088
  BACOVA_03581
  BACOVA_04901
  BACOVA_04902
  BACOVA_04949
  BACOVA_04972
  BACOVA_04983

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