SEED Subsystem: Homogentisate pathway of aromatic compound degradation in Pseudomonas simiae WCS417

Experiments:

Role Gene Name LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x  
⨯
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) PS417_14005 -1.8
  PS417_24445 -0.1
Aromatic-amino-acid aminotransferase (EC 2.6.1.57) PS417_18690 -0.8
Fumarylacetoacetase (EC 3.7.1.2) PS417_05020 N.D.
Homogentisate 1,2-dioxygenase (EC 1.13.11.5) PS417_05015 -2.1
Maleylacetoacetate isomerase (EC 5.2.1.2) No genes
Possible 3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-) No genes
Transcriptional regulator, IclR family PS417_11580 N.D.
  PS417_12120 +0.3
  PS417_15475 +0.2
  PS417_18190 +0.4
  PS417_05010 +0.2

Or select organism:

Or view this subsystem at the SEED (slow)