SEED Subsystem: DNA repair, bacterial in Sphingomonas koreensis DSMZ 15582

Experiments:

Role Gene Name Lomefloxacin 0.02 mM  
⨯
A/G-specific adenine glycosylase (EC 3.2.2.-) Ga0059261_2317 +0.3
ADA regulatory protein Ga0059261_1426 +0.1
Alkylated DNA repair protein AlkB No genes
DNA mismatch repair endonuclease MutH No genes
DNA polymerase IV (EC 2.7.7.7) Ga0059261_3438 +0.0
DNA polymerase-like protein MT3142 No genes
DNA polymerase-like protein PA0670 Ga0059261_2477 -0.0
DNA recombination protein RmuC Ga0059261_0643 -0.1
DNA recombination-dependent growth factor C No genes
DNA repair exonuclease family protein YhaO No genes
DNA repair protein RadA Ga0059261_0751 -2.0
DNA repair protein RadC Ga0059261_3175 +0.2
DNA repair protein RecN Ga0059261_1026 -2.0
DNA-damage-inducible protein I No genes
DNA-damage-inducible protein J No genes
Endonuclease IV (EC 3.1.21.2) No genes
Endonuclease V (EC 3.1.21.7) No genes
Exodeoxyribonuclease III (EC 3.1.11.2) Ga0059261_2220 -0.2
  Ga0059261_3499 -0.0
Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) Ga0059261_1440 N.D.
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) Ga0059261_1007 N.D.
  Ga0059261_1439 -0.0
Exonuclease SbcC No genes
Exonuclease SbcD No genes
G:T/U mismatch-specific uracil/thymine DNA-glycosylase Ga0059261_3449 +0.3
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) No genes
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) Ga0059261_1426 +0.1
  Ga0059261_1844 -0.0
  Ga0059261_2474 -0.2
RecA protein Ga0059261_0204 -3.7
Recombinational DNA repair protein RecT (prophage associated) No genes
SOS-response repressor and protease LexA (EC 3.4.21.88) Ga0059261_0934 N.D.
Single-stranded DNA-binding protein Ga0059261_2288 N.D.
Very-short-patch mismatch repair endonuclease (G-T specific) Ga0059261_2598 +0.0

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