SEED Subsystem: Oxidative stress in Escherichia coli BW25113

Experiments:

Role Gene Name M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr  
⨯
Alkyl hydroperoxide reductase subunit C-like protein No genes
Catalase (EC 1.11.1.6) b3942 katG +0.0
  b1732 katE -0.1
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR b0683 fur -0.9
Ferroxidase (EC 1.16.3.1) b0812 dps +0.0
Fumarate and nitrate reduction regulatory protein b1334 fnr +0.2
Heme oxygenase HemO, associated with heme uptake No genes
Hydrogen peroxide-inducible genes activator b3961 oxyR +0.4
Iron-binding ferritin-like antioxidant protein b0812 dps +0.0
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) b3908 sodA -0.4
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR b4178 yjeB -0.5
NnrS protein involved in response to NO No genes
Non-specific DNA-binding protein Dps b0812 dps +0.0
Organic hydroperoxide resistance protein No genes
Organic hydroperoxide resistance transcriptional regulator No genes
Paraquat-inducible protein A b0950 pqiA -0.9
  b1833 yebS -0.4
Paraquat-inducible protein B b0951 pqiB -1.0
  b0952 ymbA -1.1
  b1834 yebT -0.1
Peroxidase (EC 1.11.1.7) b3942 katG +0.0
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) No genes
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR b4063 soxR +0.0
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS b4062 soxS +0.2
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) b1646 sodC N.D.
Superoxide dismutase [Fe] (EC 1.15.1.1) b1656 sodB -0.6
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR b4046 yjbK -0.4
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family No genes
transcriptional regulator, Fur family No genes

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