SEED Subsystem: TCA Cycle in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name Fusidic 0.125 mg/ml  
⨯
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Pf1N1B4_3681 N.D.
Aconitate hydratase (EC 4.2.1.3) Pf1N1B4_3888 -0.1
Aconitate hydratase 2 (EC 4.2.1.3) No genes
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) Pf1N1B4_3676 N.D.
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) Pf1N1B4_1976 -0.2
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) Pf1N1B4_3683 N.D.
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) No genes
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Pf1N1B4_3682 N.D.
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) Pf1N1B4_683 +1.2
Fumarate hydratase class II (EC 4.2.1.2) Pf1N1B4_1088 N.D.
  Pf1N1B4_367 -0.2
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Pf1N1B4_4052 +0.1
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) No genes
Malate:quinone oxidoreductase (EC 1.1.5.4) Pf1N1B4_2939 -0.7
  Pf1N1B4_4189 +0.6
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Pf1N1B4_3679 N.D.
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Pf1N1B4_3680 N.D.
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Pf1N1B4_3685 +2.3
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Pf1N1B4_3684 +2.4
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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