SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days  
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COG2047: Uncharacterized protein (ATP-grasp superfamily) No genes
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 BPHYT_RS03205 +0.1
GTP cyclohydrolase I (EC 3.5.4.16) type 1 BPHYT_RS21405 -0.1
GTP cyclohydrolase I (EC 3.5.4.16) type 2 BPHYT_RS33570 +0.7
Glutamine amidotransferases class-II (GATase) No genes
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) BPHYT_RS20700 +2.1
  BPHYT_RS21970 -0.6
  BPHYT_RS24460 +0.0
NADPH dependent preQ0 reductase No genes
NADPH dependent preQ0 reductase-like No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) BPHYT_RS09530 N.D.
  BPHYT_RS22160 +0.4
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8) No genes
Permease of the drug/metabolite transporter (DMT) superfamily BPHYT_RS02105 +0.2
  BPHYT_RS03310 -0.0
  BPHYT_RS06995 +0.0
  BPHYT_RS07030 N.D.
  BPHYT_RS08935 N.D.
  BPHYT_RS13190 -0.9
  BPHYT_RS13240 -0.1
  BPHYT_RS15975 -0.3
  BPHYT_RS18390 -0.0
  BPHYT_RS21400 N.D.
  BPHYT_RS23730 +0.5
  BPHYT_RS23950 +0.9
  BPHYT_RS24265 N.D.
  BPHYT_RS34415 -0.2
  BPHYT_RS35035 +0.3
Putative preQ0 transporter No genes
Queuosine Biosynthesis QueC ATPase BPHYT_RS01500 -0.3
Queuosine Biosynthesis QueE Radical SAM BPHYT_RS01505 -1.4
Queuosine biosynthesis QueD, PTPS-I No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB BPHYT_RS15335 -0.9
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) BPHYT_RS03405 -0.8
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5 No genes
glutamyl-Q-tRNA synthetase BPHYT_RS06160 -0.4
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
tRNA-guanine transglycosylase (EC 2.4.2.29) BPHYT_RS03410 -1.1

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