SEED Subsystem: Xylose utilization in Rahnella sp. WP5

Experiments:

Role Gene Name D-Xylose (C)  
2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Acetyl xylan esterase (EC 3.1.1.41) No genes
Acetyl xylan esterase XylU (EC 3.1.1.41) No genes
Alpha-xylosidase (EC 3.2.1.-) EX31_RS02185 -0.1
  EX31_RS09740 +0.1
Beta-xylosidase (EC 3.2.1.37) EX31_RS11665 -0.1
D-xylose 1-dehydrogenase (EC 1.1.1.175) No genes
D-xylose proton-symporter XylE No genes
D-xylose proton-symporter XylT No genes
D-xylose transport ATP-binding protein XylG EX31_RS09755 -1.0
D-xylose-specific 1-epimerase (mutarotase) No genes
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) EX31_RS11975 +0.0
Endo-1,4-beta-xylanase B ( EC 3.2.1.8 ) No genes
Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8) No genes
NAD(P)H-dependent D-xylose reductase (EC 1.1.1.-) No genes
Novel Xylose regulator from LacI family No genes
Phosphotransferase system for xylose-containing disaccharide, EIIA component No genes
Phosphotransferase system for xylose-containing disaccharide, EIIB component No genes
Phosphotransferase system for xylose-containing disaccharide, EIIC component No genes
Phosphotransferase system for xylose-containing disaccharide, EIID component No genes
Possible alpha-xyloside ABC transporter, ATP-binding component No genes
Possible alpha-xyloside ABC transporter, permease component No genes
Possible alpha-xyloside ABC transporter, substrate-binding component No genes
Predicted xylose oligosaccharide ABC transporter, substrate-binding component No genes
Putative alpha-xylosidase (EC 3.2.1.-) No genes
Putative xylulose kinase (EC 2.7.1.17) No genes
Xylanase No genes
Xylonate dehydratase (EC 4.2.1.82) No genes
Xylonolactonase (EC 3.1.1.68) No genes
Xylose ABC transporter, ATP-binding component No genes
Xylose ABC transporter, periplasmic xylose-binding protein XylF EX31_RS09760 -0.3
Xylose ABC transporter, permease component No genes
Xylose ABC transporter, permease protein XylH EX31_RS09750 -0.3
Xylose ABC transporter, substrate-binding component No genes
Xylose activator XylR (AraC family) EX31_RS09745 -2.9
Xylose isomerase (EC 5.3.1.5) EX31_RS09765 -3.5
Xylose oligosaccharides ABC transporter, ATP-binding protein 1 No genes
Xylose oligosaccharides ABC transporter, ATP-binding protein 2 No genes
Xylose oligosaccharides ABC transporter, permease protein 1 No genes
Xylose oligosaccharides ABC transporter, permease protein 2 No genes
Xylose oligosaccharides ABC transporter, sugar-binding protein No genes
Xylose-responsive transcription regulator, ROK family EX31_RS10135 -0.3
Xyloside transporter XynT EX31_RS02190 -0.2
  EX31_RS09735 -0.3
  EX31_RS11660 +0.3
Xylulose kinase (EC 2.7.1.17) EX31_RS09770 -3.3
predicted 2-keto-3-deoxyxylonate dehydratase No genes
predicted xylose isomerase No genes

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