| Role | Gene | Name | D-Gluconic Acid (C) | |
| | | ⨯ | |
| 2,5-diketo-D-gluconate reductase A (EC 1.1.1.274) | No genes | | | |
| 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) | PS417_10670 | | +0.3 | |
| 2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, cytochrome c | No genes | | | |
| 2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, flavoprotein | No genes | | | |
| 2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, gamma subunit | No genes | | | |
| 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | PS417_12130 | | +0.3 | |
| 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) | No genes | | | |
| 5-keto-D-gluconate 5-reductase (EC 1.1.1.69) | No genes | | | |
| Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldA | No genes | | | |
| Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldB | No genes | | | |
| Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c | PS417_00270 | | -0.2 | |
| Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein | PS417_00265 | | -0.1 | |
| Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit | PS417_00260 | | -0.2 | |
| Gluconate operon transcriptional repressor | No genes | | | |
| Gluconate permease | No genes | | | |
| Gluconate permease, Bsu4004 homolog | No genes | | | |
| Gluconate transporter family protein | PS417_21980 | | -1.3 | |
| | PS417_23605 | | +0.1 | |
| | PS417_03340 | | +0.3 | |
| Gluconate utilization system Gnt-I transcriptional repressor | PS417_21990 | | +0.2 | |
| Gluconokinase (EC 2.7.1.12) | PS417_21985 | | N.D. | |
| Glucose 1-dehydrogenase (EC 1.1.1.47) | PS417_09690 | | +0.1 | |
| | PS417_13985 | | -0.2 | |
| Glucose dehydrogenase (EC 1.1.99.10), membrane-bound, cytochrome c | No genes | | | |
| Glucose dehydrogenase (EC 1.1.99.10), membrane-bound, flavoprotein | No genes | | | |
| Glucose dehydrogenase (EC 1.1.99.10), membrane-bound, gamma subunit | No genes | | | |
| Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) | PS417_05300 | | +0.1 | |
| High-affinity gluconate transporter GntT | No genes | | | |
| Hypothetical oxidoreductase YqhD (EC 1.1.-.-) | No genes | | | |
| Hypothetical transcriptional regulator YqhC | No genes | | | |
| L-idonate 5-dehydrogenase (EC 1.1.1.264) | No genes | | | |
| L-idonate, D-gluconate, 5-keto-D-gluconate transporter | No genes | | | |
| Low-affinity gluconate/H+ symporter GntU | No genes | | | |
| Positive regulator of L-idonate catabolism | No genes | | | |
| Predicted gluconate TRAP family transporter, DctM subunit | No genes | | | |
| Predicted gluconate TRAP family transporter, DctP subunit | No genes | | | |
| Predicted gluconate TRAP family transporter, DctQ subunit | No genes | | | |