SEED Subsystem: Serine-glyoxylate cycle in Ralstonia sp. UNC404CL21Col

Experiments:

Role Gene Name Trans-2-methyl-2-butenoic (C)  
⨯
3-ketoacyl-CoA thiolase (EC 2.3.1.16) ABZR87_RS06305 -5.4
  ABZR87_RS12575 -0.0
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) ABZR87_RS04865 -4.9
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL) No genes
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) ABZR87_RS04880 -0.5
Acetoacetyl-CoA reductase (EC 1.1.1.36) ABZR87_RS13290 -1.5
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Aconitate hydratase (EC 4.2.1.3) No genes
Citrate synthase (EC 2.3.3.1) No genes
Citrate synthase (si) (EC 2.3.3.1) ABZR87_RS04350 -0.1
  ABZR87_RS14545 N.D.
  ABZR87_RS17920 -0.3
Enolase (EC 4.2.1.11) ABZR87_RS10470 N.D.
Formate--tetrahydrofolate ligase (EC 6.3.4.3) No genes
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) ABZR87_RS14375 -1.8
Fumarate hydratase class I, anaerobic (EC 4.2.1.2) No genes
GDSL-like lipase/acylhydrolase No genes
Glycerate kinase (EC 2.7.1.31) No genes
Isocitrate lyase (EC 4.1.3.1) ABZR87_RS08330 -0.2
  ABZR87_RS11590 +0.1
Malate dehydrogenase (EC 1.1.1.37) ABZR87_RS14580 N.D.
Malate synthase-related protein No genes
Malyl-CoA lyase (EC 4.1.3.24) No genes
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) ABZR87_RS13485 N.D.
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) ABZR87_RS06220 -0.2
  ABZR87_RS06260 +0.3
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) ABZR87_RS06280 +0.1
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9) No genes
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) ABZR87_RS13485 N.D.
Methylmalonyl-CoA mutase (EC 5.4.99.2) ABZR87_RS06050 +0.1
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27) No genes
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) No genes
Phosphoglyceromutase No genes
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) No genes
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) ABZR87_RS08955 N.D.
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes
Serine--pyruvate aminotransferase (EC 2.6.1.51) No genes
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) ABZR87_RS14560 N.D.
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) ABZR87_RS14555 N.D.
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) ABZR87_RS07985 N.D.
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) ABZR87_RS07980 N.D.
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) ABZR87_RS13770 -0.3
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) ABZR87_RS13765 N.D.
  ABZR87_RS17855 +0.2
crotonyl-CoA reductase No genes
cytosolic long-chain acyl-CoA thioester hydrolase family protein No genes
decarboxylase No genes
isobutyryl-CoA dehydrogenase No genes
low-specificity D-threonine aldolase ABZR87_RS05880 -0.0
  ABZR87_RS16410 -0.3
polyhydroxyalkanoate synthesis repressor PhaR No genes
putative glycerate kinase No genes
putative isobutyryl-CoA mutase, chain B No genes

Or select organism:

Or view this subsystem at the SEED (slow)