SEED Subsystem: Deoxyribose and Deoxynucleoside Catabolism in Escherichia coli BW25113

Experiments:

Role Gene Name LB in EcoFAB_3.5mL  
⨯
Deoxyribonucleoside regulator DeoR (transcriptional repressor) No genes
Deoxyribose operon repressor, DeoR family b0840 deoR -0.9
Deoxyribose-phosphate aldolase (EC 4.1.2.4) b4381 deoC -0.3
Nucleoside permease NupC b2393 nupC -0.1
Phosphopentomutase (EC 5.4.2.7) b4383 deoB +0.1
Predicted nucleoside ABC transporter, ATP-binding component No genes
Predicted nucleoside ABC transporter, permease 1 component No genes
Predicted nucleoside ABC transporter, permease 2 component No genes
Predicted nucleoside ABC transporter, substrate-binding component No genes
Purine nucleoside phosphorylase (EC 2.4.2.1) b4384 deoD +0.2
Putative deoxyribonuclease YjjV b4378 yjjV +0.0
Putative deoxyribose-specific ABC transporter, ATP-binding protein No genes
Putative deoxyribose-specific ABC transporter, permease protein No genes
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) No genes
Ribokinase (EC 2.7.1.15) b3752 rbsK +1.8
Thymidine phosphorylase (EC 2.4.2.4) b4382 deoA -0.0

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