SEED Subsystem: Oxidative stress in Agrobacterium fabrum C58

Experiments:

Role Gene Name Erythromycin 12.5 ug/mL  
⨯
Alkyl hydroperoxide reductase subunit C-like protein Atu1480 -0.3
  Atu3655 -0.1
Catalase (EC 1.11.1.6) Atu4642 N.D.
  Atu5491 +0.1
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR Atu0354 +0.5
Ferroxidase (EC 1.16.3.1) Atu2477 +0.0
  Atu4777 +0.1
Fumarate and nitrate reduction regulatory protein No genes
Heme oxygenase HemO, associated with heme uptake Atu2502 +0.3
Hydrogen peroxide-inducible genes activator Atu4641 -0.2
Iron-binding ferritin-like antioxidant protein Atu2477 +0.0
  Atu4777 +0.1
Iron-responsive regulator Irr Atu0153 +0.1
Manganese superoxide dismutase (EC 1.15.1.1) Atu0876 -3.3
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR Atu3666 -0.3
  Atu3668 +0.4
NnrS protein involved in response to NO Atu4383 +0.3
  Atu4404 -0.1
Non-specific DNA-binding protein Dps Atu2477 +0.0
  Atu4777 +0.1
Organic hydroperoxide resistance protein Atu0847 -0.4
Organic hydroperoxide resistance transcriptional regulator Atu0846 -0.6
  Atu0852 +0.1
  Atu4864 +0.3
  Atu5064 -0.7
  Atu5211 N.D.
  Atu5273 N.D.
Paraquat-inducible protein A No genes
Paraquat-inducible protein B No genes
Peroxidase (EC 1.11.1.7) Atu4642 N.D.
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) Atu1990 +0.1
  Atu2165 +0.3
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR Atu3915 -0.1
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) Atu4583 -0.0
  Atu4726 +0.2
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR Atu1518 +1.1
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family Atu2394 +1.9
transcriptional regulator, Fur family No genes

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