SEED Subsystem: Pyridoxin (Vitamin B6) Biosynthesis in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate B  
⨯
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Pf6N2E2_4931 N.D.
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) Pf6N2E2_4806 N.D.
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Pf6N2E2_1079 +0.0
  Pf6N2E2_2725 -0.0
  Pf6N2E2_3246 N.D.
  Pf6N2E2_372 +0.2
  Pf6N2E2_3932 -4.5
  Pf6N2E2_562 -0.0
  Pf6N2E2_6020 -0.1
D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) No genes
Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) Pf6N2E2_2297 N.D.
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) Pf6N2E2_2899 +0.3
Phosphoserine aminotransferase (EC 2.6.1.52) Pf6N2E2_2521 N.D.
Predicted transcriptional regulator of pyridoxine metabolism No genes
Pyridoxal kinase (EC 2.7.1.35) Pf6N2E2_4268 -0.3
Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) Pf6N2E2_2939 N.D.
  Pf6N2E2_718 -4.3
Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) Pf6N2E2_5429 N.D.
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) No genes
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) No genes
Substrate-specific component PdxT of predicted pyridoxine ECF transporter No genes

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