MetaCyc Pathway: aerobic respiration II (cytochrome c) (yeast) in Pseudomonas fluorescens FW300-N1B4

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Reactions and Genes 4C survival; 24 hrs
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NADH[in] + H+[in] + a ubiquinone→a ubiquinol + NAD+[in] (EC 1.6.5.9)
Pf1N1B4_2826 -0.1
Pf1N1B4_4604 +0.3
Succinate dehydrogenase (ubiquinone):
succinate[in] + a ubiquinone→a ubiquinol + fumarate[in] (EC 1.3.5.1)
Pf1N1B4_3679 N.D.
a ubiquinol + 2 an oxidized c-type cytochrome[out] + 2 H+[in]→2 a reduced c-type cytochrome[out] + 4 H+[out] + a ubiquinone (EC 7.1.1.8)
No genes
4 a reduced c-type cytochrome[out] + dioxygen[in] + 8 H+[in]→2 H2O[in] + 4 an oxidized c-type cytochrome[out] + 4 H+[out] (EC 7.1.1.9)
Pf1N1B4_1853 +0.0
Pf1N1B4_1854 -0.1
Pf1N1B4_1857 +0.1
Pf1N1B4_3287 -0.1
Pf1N1B4_3288 -0.0
Pf1N1B4_3289 -0.2
Pf1N1B4_3290 +0.1
Pf1N1B4_3876 +0.2
Pf1N1B4_3877 N.D.
Pf1N1B4_3878 -0.3
Pf1N1B4_3879 -0.1
Pf1N1B4_3881 -1.1
Pf1N1B4_3882 N.D.
Pf1N1B4_3883 -1.3
Pf1N1B4_3884 -1.2
Pf1N1B4_4654 -0.4

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information