MetaCyc Pathway: C4 photosynthetic carbon assimilation cycle, PEPCK type in Pseudomonas simiae WCS417

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Reactions and Genes L-Lysine 60 mM
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Carbonate dehydratase (in reverse):
CO2 + H2O→hydrogen carbonate + H+ (EC 4.2.1.1)
PS417_07350 N.D.
PS417_28330 -0.3
PS417_00285 -1.2
PS417_03310 -1.4
Phosphoenolpyruvate carboxylase (in reverse):
hydrogen carbonate + phosphoenolpyruvate→oxaloacetate + phosphate (EC 4.1.1.31)
PS417_06060 +0.2
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→L-aspartate + 2-oxoglutarate (EC 2.6.1.1)
PS417_08560 +0.2
PS417_09070 -0.0
PS417_09120 -0.0
PS417_11840 +0.1
PS417_12775 -0.3
PS417_12985 -0.2
PS417_13545 -0.4
PS417_14865 +0.3
PS417_15040 +0.1
PS417_15990 +0.3
PS417_19025 +0.0
PS417_19385 -0.0
PS417_19910 +0.0
PS417_21030 -0.1
PS417_21275 +0.0
PS417_23120 -0.1
PS417_27730 -0.0
PS417_28165 -0.0
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) (in reverse):
oxaloacetate + NADPH + H+→(S)-malate + NADP+ (EC 1.1.1.40; 1.1.1.82)
PS417_01950 +0.4
L-aspartate[in]→L-aspartate[out]
No genes
(S)-malate[in]→(S)-malate[out]
No genes
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)):
(S)-malate + NADP+→CO2 + pyruvate + NADPH (EC 1.1.1.40)
PS417_01950 +0.4
Aspartate transaminase:
L-aspartate + 2-oxoglutarate→oxaloacetate + L-glutamate (EC 2.6.1.1)
PS417_08560 +0.2
PS417_09070 -0.0
PS417_09120 -0.0
PS417_11840 +0.1
PS417_12775 -0.3
PS417_12985 -0.2
PS417_13545 -0.4
PS417_14865 +0.3
PS417_15040 +0.1
PS417_15990 +0.3
PS417_19025 +0.0
PS417_19385 -0.0
PS417_19910 +0.0
PS417_21030 -0.1
PS417_21275 +0.0
PS417_23120 -0.1
PS417_27730 -0.0
PS417_28165 -0.0
Alanine transaminase (in reverse):
pyruvate + L-glutamate→L-alanine + 2-oxoglutarate (EC 2.6.1.2)
PS417_08560 +0.2
PS417_21975 +0.1
Phosphoenolpyruvate carboxykinase (ATP):
oxaloacetate + ATP→CO2 + phosphoenolpyruvate + ADP (EC 4.1.1.49)
PS417_01210 +0.4
L-alanine[in]→L-alanine[out]
No genes
phosphoenolpyruvate[in]→phosphoenolpyruvate[out]
No genes
Alanine transaminase (in reverse):
L-alanine + 2-oxoglutarate→pyruvate + L-glutamate (EC 2.6.1.2)
PS417_08560 +0.2
Pyruvate, phosphate dikinase:
pyruvate + ATP + phosphate→phosphoenolpyruvate + AMP + diphosphate + H+ (EC 2.7.9.1)
No genes

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information