Homologs of Psyr_0238 from Pseudomonas syringae pv. syringae B728a

Helix-turn-helix motif protein
SEED: Putrescine utilization regulator

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas syringae pv. syringae B728a Psyr_0238 Helix-turn-helix motif protein insig. 100 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0238 Helix-turn-helix motif protein insig. 100 100
o Pseudomonas fluorescens FW300-N2E3 AO353_09140 XRE family transcriptional regulator strong 90 91
o Pseudomonas fluorescens FW300-N2C3 AO356_12635 XRE family transcriptional regulator strong 90 91
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4394 Putrescine utilization regulator strong 90 91
o Pseudomonas sp. DMC3 GFF387 HTH-type transcriptional regulator PuuR cofit 89 91
o Pseudomonas fluorescens SBW25 PFLU_RS29365 cupin domain-containing protein cofit 90 91
o Pseudomonas fluorescens SBW25-INTG PFLU_RS29365 cupin domain-containing protein strong 90 91
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00005 HTH-type transcriptional regulator PuuR cofit 90 91
o Pseudomonas simiae WCS417 PS417_27690 XRE family transcriptional regulator strong 90 91
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2147 Putrescine utilization regulator strong 90 91
o Pseudomonas orientalis W4I3 QF045_RS02040 cupin domain-containing protein cofit 89 91
o Pseudomonas sp. RS175 PFR28_04396 HTH-type transcriptional regulator PuuR strong 88 91
o Pseudomonas fluorescens GW456-L13 PfGW456L13_815 Putrescine utilization regulator strong 88 91
o Pseudomonas sp. SVBP6 COO64_RS01380 cupin domain-containing protein insig. 87 91
o Pseudomonas putida KT2440 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine strong 86 91
o Pseudomonas sp. BP01 JOY50_RS09135 cupin domain-containing protein insig. 85 91
o Pseudomonas segetis P6 ACVTMO_RS00025 cupin domain-containing protein strong 81 91
o Pseudomonas aeruginosa MRSN321 DY961_RS12395 cupin domain-containing protein strong 81 91
o Pseudomonas aeruginosa PA14 IKLFDK_26945 XRE family transcriptional regulator strong 81 91
o Pseudomonas aeruginosa PUPa3 DQ20_RS49735 cupin domain-containing protein strong 81 91
o Pseudomonas stutzeri RCH2 Psest_3791 Predicted transcriptional regulators insig. 80 91
o Pseudomonas sp. S08-1 OH686_13700 Putrescine utilization regulator strong 77 91
o Shewanella sp. ANA-3 Shewana3_3100 XRE family transcriptional regulator (RefSeq) strong 62 98
o Shewanella oneidensis MR-1 SO1265 transcriptional regulator, putative (NCBI ptt file) strong 66 91
o Shewanella loihica PV-4 Shew_0970 XRE family transcriptional regulator (RefSeq) strong 64 91
o Shewanella amazonensis SB2B Sama_2646 XRE family transcriptional regulator (RefSeq) strong 64 91
o Rhodospirillum rubrum S1H Rru_A2042 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) insig. 53 90
o Sinorhizobium meliloti 1021 SMc04387 aldehyde dehydrogenase insig. 51 92
o Agrobacterium fabrum C58 Atu3328 aldehyde dehydrogenase strong 50 92
o Xanthobacter sp. DMC5 GFF3339 HTH-type transcriptional regulator PuuR insig. 51 91
o Bosea sp. OAE506 ABIE41_RS05345 cupin domain-containing protein insig. 49 91
  Burkholderia phytofirmans PsJN BPHYT_RS23170 XRE family transcriptional regulator insig. 50 92
  Azospirillum sp. SherDot2 MPMX19_04921 HTH-type transcriptional regulator PuuR insig. 50 91
  Paraburkholderia sabiae LMG 24235 QEN71_RS12920 cupin domain-containing protein insig. 50 92
  Pseudomonas sp. SVBP6 COO64_RS10815 cupin domain-containing protein insig. 49 91
  Pseudomonas syringae pv. syringae B728a Psyr_2705 Helix-turn-helix motif protein sig. 49 91
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2705 Helix-turn-helix motif protein sig. 49 91
  Azospirillum brasilense Sp245 AZOBR_RS19640 aldehyde dehydrogenase strong 48 91
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4357 Putrescine utilization regulator sig. 51 91
  Pseudomonas sp. BP01 JOY50_RS05840 cupin domain-containing protein insig. 49 91
  Pseudomonas sp. DMC3 GFF1632 HTH-type transcriptional regulator PuuR cofit 50 91
  Pseudomonas putida KT2440 PP_2884 XRE family transcriptional regulator strong 49 91
  Pseudomonas fluorescens FW300-N2E3 AO353_29285 XRE family transcriptional regulator strong 50 91
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS01235 HTH-type transcriptional regulator PuuR cofit 46 90
o Pantoea sp. MT58 IAI47_07115 HTH-type transcriptional regulator PuuR insig. 44 93
o Rahnella sp. WP5 EX31_RS17905 HTH-type transcriptional regulator PuuR insig. 41 92
o Serratia liquefaciens MT49 IAI46_17165 HTH-type transcriptional regulator PuuR strong 43 92
o Escherichia coli BL21 ECD_01276 repressor for the divergent puu operons, putrescine inducible strong 43 92
o Escherichia coli ECOR27 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR insig. 43 92
o Escherichia coli ECOR38 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR insig. 43 92
o Escherichia coli ECRC62 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR insig. 43 92
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02383 HTH-type transcriptional regulator PuuR insig. 43 92
o Escherichia coli BW25113 b1299 puuR DNA-binding transcriptional repressor (NCBI) strong 43 92
o Klebsiella michiganensis M5al BWI76_RS10700 XRE family transcriptional regulator strong 44 92
o Enterobacter asburiae PDN3 EX28DRAFT_1500 Predicted transcriptional regulators insig. 44 92
o Escherichia coli ECRC100 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR cofit 43 92
o Escherichia coli ECRC101 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR insig. 43 92
o Escherichia coli ECRC102 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR insig. 43 92
o Escherichia coli ECRC98 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR insig. 43 92
o Escherichia coli ECRC99 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR no data 43 92
o Klebsiella pneumoniae MKP103 KDGMDA_18340 HTH-type transcriptional regulator PuuR insig. 43 92
  Serratia liquefaciens MT49 IAI46_10550 HTH-type transcriptional regulator PuuR insig. 42 93
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3219 Transcriptional regulator, Cro/CI family insig. 36 90
  Pseudomonas sp. SVBP6 COO64_RS21060 helix-turn-helix domain-containing protein insig. 35 90
  Pseudomonas fluorescens FW300-N2E3 AO353_24790 Cro/Cl family transcriptional regulator sig. 35 90
  Pseudomonas sp. BP01 JOY50_RS05765 helix-turn-helix domain-containing protein no data 34 90
  Pseudomonas putida KT2440 PP_2868 Transcriptional regulator, Cro/CI family strong 34 90
  Pseudomonas aeruginosa MRSN321 DY961_RS10735 cupin domain-containing protein insig. 32 90
  Pseudomonas aeruginosa PA14 IKLFDK_28600 Cro/Cl family transcriptional regulator insig. 32 90
  Pseudomonas aeruginosa PUPa3 DQ20_RS51325 cupin domain-containing protein insig. 32 90
o Cupriavidus basilensis FW507-4G11 RR42_RS00225 XRE family transcriptional regulator insig. 29 92
o Fusobacterium nucleatum SB010 HUW76_07320 helix-turn-helix domain-containing protein strong 27 93
  Rhizobium sp. OAE497 ABIE40_RS00150 MerR family transcriptional regulator insig. 33 92
  Fusobacterium nucleatum SB010 HUW76_01135 cupin domain-containing protein strong 27 91
o Bacteroides stercoris CC31F HMPREF1181_RS01200 helix-turn-helix transcriptional regulator insig. 32 80
o Acidovorax sp. GW101-3H11 Ac3H11_1308 Transcriptional regulator no data 29 93
  Bosea sp. OAE506 ABIE41_RS10690 XRE family transcriptional regulator insig. 27 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS18365 cupin domain-containing protein strong 29 93
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03130 transcriptional regulator, XRE family with cupin sensor insig. 28 93
  Pseudomonas simiae WCS417 PS417_06895 DNA-binding protein sig. 31 88
  Burkholderia phytofirmans PsJN BPHYT_RS22055 DNA-binding protein strong 28 93
o Ralstonia sp. UNC404CL21Col ABZR87_RS06145 XRE family transcriptional regulator insig. 28 91
  Pseudomonas orientalis W4I3 QF045_RS09650 XRE family transcriptional regulator insig. 31 88
o Bacteroides ovatus ATCC 8483 BACOVA_01081 hypothetical protein insig. 30 80
  Methylophilus sp. DMC18 GFF507 hypothetical protein cofit 29 87
o Bacteroides thetaiotaomicron VPI-5482 BT2783 transcriptional regulator (NCBI ptt file) sig. 30 80
o Paraburkholderia graminis OAS925 ABIE53_004168 transcriptional regulator with XRE-family HTH domain strong 28 93
o Phocaeicola dorei CL03T12C01 ABI39_RS13885 helix-turn-helix transcriptional regulator insig. 29 80
  Pseudomonas fluorescens SBW25 PFLU_RS06955 helix-turn-helix domain-containing protein insig. 31 85
  Pseudomonas fluorescens SBW25-INTG PFLU_RS06955 helix-turn-helix domain-containing protein strong 31 85
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03889 HTH-type transcriptional regulator SutR insig. 29 88
  Pseudomonas orientalis W4I3 QF045_RS17975 XRE family transcriptional regulator cofit 32 87
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS17685 helix-turn-helix transcriptional regulator insig. 29 80
  Paraburkholderia sabiae LMG 24235 QEN71_RS16640 XRE family transcriptional regulator insig. 29 88
  Pseudomonas fluorescens FW300-N2C3 AO356_23675 hydroxyacid dehydrogenase insig. 29 92
  Burkholderia phytofirmans PsJN BPHYT_RS07145 DNA-binding protein insig. 26 96
  Cupriavidus basilensis FW507-4G11 RR42_RS21695 DNA-binding protein sig. 26 87
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4417 Transcriptional regulator insig. 29 87
  Variovorax sp. SCN45 GFF4938 no description insig. 29 95