| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS04015 | | ATP-dependent Clp protease ATP-binding subunit | strong | 100 | 100 |
| o | Phocaeicola dorei CL03T12C01 | ABI39_RS17205 | | ATP-dependent Clp protease ATP-binding subunit | sig. | 98 | 100 |
| o | Bacteroides thetaiotaomicron VPI-5482 | BT0898 | | ATP-dependent Clp protease (NCBI ptt file) | no data | 79 | 100 |
| o | Bacteroides ovatus ATCC 8483 | BACOVA_00721 | | ATPase family associated with various cellular activities (AAA) | strong | 79 | 100 |
| o | Bacteroides stercoris CC31F | HMPREF1181_RS16410 | | ATP-dependent Clp protease ATP-binding subunit | strong | 76 | 100 |
| o | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS02400 | | ATP-dependent Clp protease ATP-binding subunit | strong | 66 | 100 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS14890 | | Clp protease ClpC | no data | 60 | 99 |
| o | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS04820 | | ATP-dependent Clp protease ATP-binding subunit | no data | 59 | 100 |
| o | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0369 | | ATPases with chaperone activity, ATP-binding subunit | no data | 59 | 100 |
| o | Cellulophaga baltica 18 | M666_RS11645 | | ATP-dependent Clp protease ATP-binding subunit | no data | 58 | 100 |
| o | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_02100 | | Clp protease ClpC | no data | 58 | 100 |
| o | Synechococcus elongatus PCC 7942 | Synpcc7942_0260 | clpC | ATPase | no data | 47 | 100 |
| o | Synechocystis sp000284455 PCC 6803 | SGL_RS13375 | | ATP-dependent Clp protease ATP-binding subunit | no data | 47 | 100 |
| o | Mycobacterium tuberculosis H37Rv | Rv3596c | | Probable ATP-dependent protease ATP-binding subunit ClpC1 | no data | 47 | 99 |
| o | Bifidobacterium breve UCC2003 | BBR_RS17430 | | ATP-dependent Clp protease ATP-binding subunit | no data | 47 | 99 |
| | Klebsiella michiganensis M5al | BWI76_RS21440 | | ATP-dependent chaperone ClpB | insig. | 45 | 95 |
| | Enterobacter sp. TBS_079 | MPMX20_03461 | | Chaperone protein ClpB | insig. | 44 | 96 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_02125 | | ATP-dependent chaperone ClpB | insig. | 44 | 95 |
| | Escherichia coli BL21 | ECD_02482 | | protein disaggregation chaperone | cofit | 44 | 97 |
| | Escherichia fergusonii Becca | EFB2_01298 | | Chaperone protein ClpB | insig. | 44 | 97 |
| | Escherichia coli ECOR27 | NOLOHH_12940 | clpB | ATP-dependent chaperone ClpB | cofit | 44 | 97 |
| | Escherichia coli ECOR38 | HEPCGN_20390 | clpB | ATP-dependent chaperone ClpB | insig. | 44 | 97 |
| | Escherichia coli ECRC100 | OKFHMN_21265 | clpB | ATP-dependent chaperone ClpB | cofit | 44 | 97 |
| | Escherichia coli ECRC101 | MCAODC_11795 | clpB | ATP-dependent chaperone ClpB | insig. | 44 | 97 |
| | Escherichia coli ECRC102 | NIAGMN_19035 | clpB | ATP-dependent chaperone ClpB | insig. | 44 | 97 |
| | Escherichia coli ECRC62 | BNILDI_11745 | clpB | ATP-dependent chaperone ClpB | insig. | 44 | 97 |
| | Escherichia coli ECRC98 | JDDGAC_24930 | clpB | ATP-dependent chaperone ClpB | insig. | 44 | 97 |
| | Escherichia coli ECRC99 | KEDOAH_06955 | clpB | ATP-dependent chaperone ClpB | no data | 44 | 97 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01114 | | Chaperone protein ClpB | cofit | 44 | 97 |
| | Escherichia coli BW25113 | b2592 | clpB | protein disaggregation chaperone (NCBI) | sig. | 44 | 97 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS14665 | | ATP-dependent chaperone ClpB | no data | 44 | 97 |
| | Pectobacterium carotovorum WPP14 | HER17_RS05410 | | ATP-dependent chaperone ClpB | insig. | 43 | 96 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4184 | | ClpB protein | sig. | 43 | 97 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2693 | | ATP-dependent chaperone ClpB | insig. | 44 | 97 |
| | Pantoea sp. MT58 | IAI47_04435 | | ATP-dependent chaperone ClpB | sig. | 44 | 95 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS16530 | | ATP-dependent chaperone ClpB | cofit | 44 | 96 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_00820 | | Chaperone protein ClpB | strong | 50 | 77 |
| | Lysobacter sp. OAE881 | ABIE51_RS04925 | | ATP-dependent chaperone ClpB | insig. | 50 | 76 |
| | Pseudomonas stutzeri RCH2 | Psest_0711 | | ATP-dependent chaperone ClpB | insig. | 50 | 76 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_26855 | clpB | ATP-dependent chaperone ClpB | cofit | 44 | 97 |
| | Erwinia tracheiphila SCR3 | LU632_RS16935 | clpB | ATP-dependent chaperone ClpB | strong | 44 | 97 |
| | Agrobacterium fabrum C58 | Atu4177 | | ATP-dependent Clp protease, ATP-binding subunit | insig. | 48 | 79 |
| | Paraburkholderia graminis OAS925 | ABIE53_002033 | | ATP-dependent Clp protease ATP-binding subunit ClpB | sig. | 44 | 96 |
| | Alteromonas macleodii MIT1002 | MIT1002_02677 | | Heat shock protein F84.1 | strong | 42 | 99 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00817 | | ATP-dependent Clp protease ATP-binding subunit ClpB | insig. | 44 | 96 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1089 | clpB | ATPase | strong | 42 | 99 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1495 | | ClpB protein | sig. | 50 | 75 |
| | Pseudomonas sp. RS175 | PFR28_03746 | | Chaperone protein ClpB | sig. | 49 | 75 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_15935 | | ATP-dependent chaperone ClpB | cofit | 49 | 75 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5129 | | ClpB protein | strong | 49 | 75 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2824 | | ClpB protein | insig. | 49 | 77 |
| | Acinetobacter radioresistens SK82 | MPMX26_01096 | | Chaperone protein ClpB | cofit | 43 | 98 |
| | Erwinia amylovora T8 | OLJFJH_09740 | | ATP-dependent chaperone ClpB | sig. | 43 | 96 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_03705 | | chaperone protein ClpB | insig. | 43 | 98 |
| | Dickeya dianthicola ME23 | DZA65_RS17320 | | ATP-dependent chaperone ClpB | insig. | 42 | 96 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS08990 | | protein disaggregation chaperone | insig. | 44 | 96 |
| | Rahnella sp. WP5 | EX31_RS07560 | | ATP-dependent chaperone ClpB | strong | 43 | 97 |
| | Acinetobacter baumannii LAC-4 | RR41_RS10060 | | ATP-dependent chaperone ClpB | sig. | 43 | 98 |
| | Dickeya dianthicola 67-19 | HGI48_RS16225 | | ATP-dependent chaperone ClpB | insig. | 43 | 96 |
| | Shewanella amazonensis SB2B | Sama_2603 | | clpB protein (RefSeq) | sig. | 42 | 98 |
| | Pseudomonas simiae WCS417 | PS417_03830 | | protein disaggregation chaperone | strong | 49 | 77 |
| | Rhizobium sp. OAE497 | ABIE40_RS17260 | | ATP-dependent chaperone ClpB | sig. | 49 | 76 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_00971 | | Chaperone protein ClpB | cofit | 49 | 77 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS03880 | | ATP-dependent chaperone ClpB | insig. | 49 | 77 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS03880 | | ATP-dependent chaperone ClpB | strong | 49 | 77 |
| | Dickeya dadantii 3937 | DDA3937_RS16100 | | ATP-dependent chaperone ClpB | insig. | 42 | 96 |
| | Azospirillum brasilense Sp245 | AZOBR_RS18950 | | ATPase AAA | insig. | 42 | 98 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_14230 | | ATP-dependent chaperone ClpB | strong | 49 | 76 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1382.1 | | ClpB protein | insig. | 49 | 76 |
| | Sinorhizobium meliloti 1021 | SMc02433 | | ATP-dependent protease | insig. | 43 | 98 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0728 | | AAA ATPase, central region:Clp, N terminal:Clp, N terminal | insig. | 49 | 75 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0728 | | AAA ATPase, central region:Clp, N terminal:Clp, N terminal | insig. | 49 | 75 |
| | Pseudomonas segetis P6 | MPMX49_03920 | | Chaperone protein ClpB | sig. | 49 | 75 |
| | Pseudomonas sp. SVBP6 | COO64_RS11065 | clpB | ATP-dependent chaperone ClpB | cofit | 48 | 76 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS22370 | | ATP-dependent chaperone ClpB | insig. | 43 | 96 |
| | Shewanella sp. ANA-3 | Shewana3_3169 | | ATPase (RefSeq) | cofit | 42 | 98 |
| | Azospirillum sp. SherDot2 | MPMX19_02442 | | Chaperone protein ClpB | insig. | 42 | 98 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS05055 | | ATP-dependent chaperone ClpB | insig. | 50 | 76 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS11010 | | ATP-dependent chaperone ClpB | insig. | 42 | 98 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0617 | | ATPase AAA-2 domain protein (RefSeq) | insig. | 42 | 98 |
| | Shewanella oneidensis MR-1 | SO3577 | clpB | clpB protein (NCBI ptt file) | strong | 42 | 98 |
| | Pseudomonas sp. DMC3 | GFF4006 | | Chaperone protein ClpB | cofit | 49 | 75 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS12190 | | ATP-dependent chaperone ClpB | no data | 41 | 99 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS04955 | | ATP-dependent chaperone ClpB | strong | 50 | 77 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS04735 | | ATP-dependent chaperone ClpB | cofit | 50 | 76 |
| | Pseudomonas sp. BP01 | JOY50_RS27140 | clpB | ATP-dependent chaperone ClpB | insig. | 43 | 98 |
| | Azospirillum brasilense Sp245 | AZOBR_RS17845 | | ATPase AAA | insig. | 49 | 76 |
| | Pseudomonas sp. S08-1 | OH686_16420 | | ATP-dependent chaperone protein ClpB | insig. | 48 | 75 |
| | Bosea sp. OAE506 | ABIE41_RS23785 | | ATP-dependent chaperone ClpB | insig. | 42 | 98 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_01800 | clpB | ATP-dependent chaperone ClpB | insig. | 49 | 76 |
| | Pseudomonas putida KT2440 | PP_0625 | | Chaperone protein ClpB | sig. | 44 | 98 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS10940 | | ATP-dependent chaperone ClpB | insig. | 49 | 76 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS10545 | | protein disaggregation chaperone | strong | 41 | 98 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_2535 | | ATP-dependent chaperone ClpB | insig. | 41 | 98 |
| | Rhodopseudomonas palustris CGA009 | TX73_023005 | | ATP-dependent chaperone ClpB | insig. | 42 | 98 |
| | Mycobacterium tuberculosis H37Rv | Rv0384c | | Probable endopeptidase ATP binding protein (chain B) ClpB (ClpB protein) (heat shock protein F84.1) | no data | 47 | 79 |
| | Variovorax sp. OAS795 | ABID97_RS10930 | | ATP-dependent chaperone ClpB | insig. | 43 | 96 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS07865 | | ATP-dependent chaperone ClpB | sig. | 46 | 79 |
| | Caulobacter crescentus NA1000 | CCNA_00922 | | ClpB protein | strong | 48 | 76 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00922 | | ClpB protein | cofit | 48 | 76 |