Homologs of rlmH from Escherichia coli ECOR38

rlmH: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
SEED: LSU m3Psi1915 methyltransferase RlmH
KEGG: hypothetical protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Escherichia coli ECOR27 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH cofit 100 100
  Escherichia coli ECOR38 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 100 100
o Escherichia coli ECRC100 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH cofit 100 100
o Escherichia coli ECRC101 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH no data 100 100
o Escherichia coli ECRC102 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH no data 100 100
o Escherichia coli ECRC62 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH no data 100 100
o Escherichia coli ECRC98 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH no data 100 100
o Escherichia coli ECRC99 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH no data 100 100
o Escherichia coli BL21 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent no data 99 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H no data 99 100
o Escherichia coli Nissle 1917 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH no data 99 100
o Escherichia coli BW25113 b0636 ybeA hypothetical protein (NCBI) sig. 99 100
o Escherichia fergusonii Becca EFB2_03456 Ribosomal RNA large subunit methyltransferase H sig. 99 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4549 LSU m3Psi1915 methyltransferase RlmH strong 99 100
o Enterobacter asburiae PDN3 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH no data 97 100
o Enterobacter sp. TBS_079 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H insig. 97 100
o Klebsiella pneumoniae MKP103 KDGMDA_16400 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH strong 94 100
o Klebsiella michiganensis M5al BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH sig. 94 100
o Pantoea sp. MT58 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH strong 92 100
o Erwinia amylovora T8 OLJFJH_17220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 91 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS03285 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH cofit 90 100
o Pectobacterium carotovorum WPP14 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 90 100
o Serratia liquefaciens MT49 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 90 100
o Rahnella sp. WP5 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 89 100
o Dickeya dadantii 3937 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH no data 88 100
o Dickeya dianthicola ME23 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 88 100
o Dickeya dianthicola 67-19 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH no data 88 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_02460 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 87 100
o Erwinia tracheiphila SCR3 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 87 100
o Shewanella loihica PV-4 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) insig. 81 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 81 100
o Shewanella amazonensis SB2B Sama_2587 rRNA large subunit methyltransferase (RefSeq) insig. 79 100
o Shewanella oneidensis MR-1 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) strong 78 100
o Shewanella sp. ANA-3 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) strong 78 100
o Alteromonas macleodii MIT1002 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H no data 76 100
o Marinobacter adhaerens HP15 HP15_604 conserved hypothetical protein CHP00246 sig. 59 99
o Pseudomonas sp. S08-1 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH insig. 57 99
o Pseudomonas sp. DMC3 GFF3879 Ribosomal RNA large subunit methyltransferase H insig. 58 99
o Pseudomonas fluorescens SBW25 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 58 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH sig. 58 99
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05099 Ribosomal RNA large subunit methyltransferase H no data 58 99
o Pseudomonas simiae WCS417 PS417_24730 50S rRNA methyltransferase no data 58 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH no data 58 99
o Pseudomonas fluorescens FW300-N2E3 AO353_06480 50S rRNA methyltransferase sig. 58 99
o Pseudomonas fluorescens FW300-N2C3 AO356_15305 50S rRNA methyltransferase strong 58 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH strong 58 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH insig. 57 99
o Pseudomonas sp. RS175 PFR28_03869 Ribosomal RNA large subunit methyltransferase H sig. 57 99
o Pseudomonas putida KT2440 PP_4808 23S rRNA m3psi1915 methyltransferase sig. 57 99
o Pseudomonas sp. SVBP6 COO64_RS15615 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 57 99
o Pseudomonas syringae pv. syringae B728a Psyr_4366 Protein of unknown function DUF163 no data 56 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4366 Protein of unknown function DUF163 sig. 56 99
o Pseudomonas sp. BP01 JOY50_RS17695 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 56 99
o Pseudomonas stutzeri RCH2 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH sig. 56 99
o Kangiella aquimarina DSM 16071 B158DRAFT_0085 rRNA large subunit m3Psi methyltransferase RlmH strong 57 100
o Pseudomonas segetis P6 MPMX49_01051 Ribosomal RNA large subunit methyltransferase H sig. 55 99
o Pseudomonas aeruginosa PA14 IKLFDK_20650 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 55 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07250 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 50 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 52 99
o Lysobacter sp. OAE881 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 50 99
o Paraburkholderia graminis OAS925 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase no data 52 99
o Burkholderia phytofirmans PsJN BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H insig. 52 99
o Rhodanobacter sp. FW510-T8 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 48 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 48 99
o Rhodanobacter denitrificans MT42 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 48 99
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH sig. 48 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase insig. 52 99
o Cupriavidus basilensis FW507-4G11 RR42_RS04710 50S rRNA methyltransferase insig. 50 99
o Acinetobacter baumannii LAC-4 RR41_RS09070 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 47 99
o Acinetobacter radioresistens SK82 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H insig. 47 99
o Methylophilus sp. DMC18 GFF827 Ribosomal RNA large subunit methyltransferase H cofit 46 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH no data 51 90
o Herbaspirillum seropedicae SmR1 HSERO_RS17780 50S rRNA methyltransferase insig. 46 99
o Ralstonia solanacearum GMI1000 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH no data 50 99
o Ralstonia solanacearum PSI07 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH strong 50 99
o Variovorax sp. SCN45 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) insig. 47 100
o Variovorax sp. OAS795 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 47 100
o Castellaniella sp019104865 MT123 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 46 99
o Ralstonia sp. UNC404CL21Col ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 47 99
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 48 99
o Ralstonia solanacearum UW163 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 48 99
o Dechlorosoma suillum PS Dsui_0451 hypothetical protein insig. 46 100
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4529 LSU m3Psi1915 methyltransferase RlmH insig. 48 100
o Acidovorax sp. GW101-3H11 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH insig. 46 97
o Methanococcus maripaludis JJ MMJJ_RS09010 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH sig. 30 99
o Methanococcus maripaludis S2 MMP_RS05365 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 30 99
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 33 100
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 32 100
o Phocaeicola dorei CL03T12C01 ABI39_RS11895 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH sig. 32 100
o Bacteroides stercoris CC31F HMPREF1181_RS10755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 33 100
o Cellulophaga baltica 18 M666_RS17950 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 32 99
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS17055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 30 100
o Sinorhizobium meliloti 1021 SMc03781 rRNA large subunit methyltransferase insig. 36 99
o Rhizobium sp. OAE497 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH insig. 34 99
o Azospirillum brasilense Sp245 AZOBR_RS04060 50S rRNA methyltransferase insig. 37 99
o Dinoroseobacter shibae DFL-12 Dshi_0088 protein of unknown function DUF163 (RefSeq) insig. 35 99
o Bacteroides thetaiotaomicron VPI-5482 BT1562 conserved hypothetical protein (NCBI ptt file) insig. 30 100
o Bacteroides ovatus ATCC 8483 BACOVA_04305 putative rRNA large subunit m3Psi methyltransferase RlmH sig. 30 100
o Azospirillum sp. SherDot2 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H insig. 37 100
  Phaeobacter inhibens DSM 17395 PGA1_c29750 putative ribosomal RNA large subunit methyltransferase sig. 46 55