| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Enterobacter asburiae PDN3 | EX28DRAFT_0146 | | transcriptional regulator, RpiR family | insig. | 100 | 100 |
| o | Enterobacter sp. TBS_079 | MPMX20_03376 | | HTH-type transcriptional regulator MurR | strong | 97 | 99 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS14445 | | MurR/RpiR family transcriptional regulator | cofit | 83 | 99 |
| o | Dickeya dadantii 3937 | DDA3937_RS03665 | | MurR/RpiR family transcriptional regulator | sig. | 82 | 99 |
| o | Dickeya dianthicola 67-19 | HGI48_RS03725 | | SIS domain-containing protein | sig. | 82 | 99 |
| o | Dickeya dianthicola ME23 | DZA65_RS03850 | | MurR/RpiR family transcriptional regulator | insig. | 82 | 99 |
| o | Erwinia amylovora T8 | OLJFJH_04440 | | MurR/RpiR family transcriptional regulator | strong | 63 | 96 |
| o | Serratia liquefaciens MT49 | IAI46_24010 | | MurR/RpiR family transcriptional regulator | strong | 62 | 97 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_11575 | | MurR/RpiR family transcriptional regulator | sig. | 64 | 96 |
| o | Pantoea sp. MT58 | IAI47_01475 | | MurR/RpiR family transcriptional regulator | strong | 63 | 96 |
| o | Klebsiella michiganensis M5al | BWI76_RS03080 | | (Fe-S)-cluster assembly protein | strong | 64 | 96 |
| o | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_06545 | rpiR | MurR/RpiR family transcriptional regulator | sig. | 64 | 96 |
| o | Erwinia tracheiphila SCR3 | LU632_RS02360 | | MurR/RpiR family transcriptional regulator | insig. | 64 | 96 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS17985 | | MurR/RpiR family transcriptional regulator | strong | 62 | 96 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF883 | | Predicted transcriptional regulator of the myo-inositol catabolic operon | strong | 63 | 96 |
| o | Caulobacter crescentus NA1000 | CCNA_01355 | | transcriptional regulator IolR | strong | 43 | 95 |
| o | Caulobacter crescentus NA1000 Δfur | CCNA_01355 | | transcriptional regulator IolR | cofit | 43 | 95 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS17960 | | MurR/RpiR family transcriptional regulator | insig. | 41 | 98 |
| o | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS15395 | | MurR/RpiR family transcriptional regulator | sig. | 41 | 98 |
| o | Ralstonia solanacearum UW163 | UW163_RS12855 | | MurR/RpiR family transcriptional regulator | sig. | 41 | 98 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04463 | | transcriptional regulator, RpiR family | strong | 40 | 96 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS13890 | | RpiR family transcriptional regulator | strong | 40 | 96 |
| o | Ralstonia solanacearum GMI1000 | RS_RS06260 | | MurR/RpiR family transcriptional regulator | no data | 40 | 96 |
| o | Paraburkholderia graminis OAS925 | ABIE53_002944 | | DNA-binding MurR/RpiR family transcriptional regulator | strong | 40 | 96 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS12105 | | RpiR family transcriptional regulator | strong | 38 | 97 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS05080 | | MurR/RpiR family transcriptional regulator | sig. | 38 | 96 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_510 | | Predicted transcriptional regulator of the myo-inositol catabolic operon | strong | 38 | 95 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02650 | | HTH-type transcriptional regulator MurR | cofit | 38 | 95 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_23155 | | RpiR family transcriptional regulator | strong | 38 | 95 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4273 | | Predicted transcriptional regulator of the myo-inositol catabolic operon | sig. | 37 | 95 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS12580 | | MurR/RpiR family transcriptional regulator | strong | 37 | 95 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS12580 | | MurR/RpiR family transcriptional regulator | strong | 37 | 95 |
| o | Pseudomonas orientalis W4I3 | QF045_RS14570 | | MurR/RpiR family transcriptional regulator | cofit | 37 | 95 |
| o | Pseudomonas simiae WCS417 | PS417_11845 | | RpiR family transcriptional regulator | strong | 37 | 95 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_21330 | | RpiR family transcriptional regulator | sig. | 37 | 95 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_3275 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | sig. | 38 | 94 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3275 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | insig. | 38 | 94 |
| o | Pseudomonas sp. RS175 | PFR28_02426 | | HTH-type transcriptional regulator MurR | strong | 36 | 98 |
| o | Pseudomonas sp. DMC3 | GFF1723 | | HTH-type transcriptional regulator MurR | cofit | 38 | 95 |
| o | Pseudomonas segetis P6 | MPMX49_00430 | | hypothetical protein | strong | 34 | 100 |
| o | Sinorhizobium meliloti 1021 | SMc01164 | | hypothetical protein | strong | 36 | 94 |
| | Serratia liquefaciens MT49 | IAI46_12855 | | MurR/RpiR family transcriptional regulator | insig. | 34 | 93 |
| o | Agrobacterium fabrum C58 | Atu4514 | | RpiR family transcriptional regulator | strong | 36 | 96 |
| o | Rhizobium sp. OAE497 | ABIE40_RS05995 | | MurR/RpiR family transcriptional regulator | strong | 35 | 96 |
| o | Variovorax sp. SCN45 | GFF6654 | | Transcriptional regulator, RpiR family | insig. | 32 | 95 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS17585 | | DNA-binding protein | no data | 30 | 94 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02617 | | transcriptional regulator, RpiR family | insig. | 30 | 95 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS26840 | | DNA-binding protein | strong | 29 | 97 |
| o | Castellaniella sp019104865 MT123 | ABCV34_RS13380 | | MurR/RpiR family transcriptional regulator | insig. | 32 | 98 |
| | Paraburkholderia graminis OAS925 | ABIE53_005821 | | DNA-binding MurR/RpiR family transcriptional regulator | strong | 30 | 95 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS27175 | | DNA-binding protein | insig. | 31 | 98 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05904 | | transcriptional regulator, RpiR family | no data | 30 | 98 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS10985 | | MurR/RpiR family transcriptional regulator | insig. | 30 | 95 |
| | Klebsiella michiganensis M5al | BWI76_RS14460 | | MurR/RpiR family transcriptional regulator | strong | 30 | 83 |
| | Sinorhizobium meliloti 1021 | SM_b20276 | | transcriptional regulator | insig. | 26 | 96 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS14095 | | MurR/RpiR family transcriptional regulator | insig. | 29 | 97 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS33775 | | MurR/RpiR family transcriptional regulator | strong | 27 | 92 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS04920 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 97 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02611 | | transcriptional regulator, RpiR family | strong | 29 | 92 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS12005 | | transcriptional regulator | insig. | 28 | 95 |
| | Ralstonia solanacearum GMI1000 | RS_RS00410 | | MurR/RpiR family transcriptional regulator | insig. | 26 | 84 |
| | Variovorax sp. SCN45 | GFF2758 | | Transcriptional regulator, RpiR family | insig. | 27 | 92 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS09825 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 84 |
| | Ralstonia solanacearum UW163 | UW163_RS03755 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 84 |
| | Ralstonia solanacearum GMI1000 | RS_RS08795 | | MurR/RpiR family transcriptional regulator | sig. | 25 | 97 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS13500 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 95 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS09180 | | transcriptional regulator | insig. | 28 | 94 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS17530 | | RpiR family transcriptional regulator | strong | 28 | 81 |
| | Ralstonia solanacearum GMI1000 | RS_RS06905 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 89 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS17250 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 89 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS23545 | | MurR/RpiR family transcriptional regulator | insig. | 23 | 90 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_262p02290 | | sugar isomerase-like protein | sig. | 25 | 97 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS25830 | qapR;inference=COORDINATES | transcriptional repressor QapR | strong | 25 | 96 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS58260 | qapR;inference=COORDINATES | transcriptional repressor QapR | strong | 25 | 96 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS11695 | | MurR/RpiR family transcriptional regulator | insig. | 27 | 91 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_25880 | | transcriptional repressor QapR | strong | 25 | 96 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS00230 | | MurR/RpiR family transcriptional regulator | insig. | 27 | 95 |
| | Ralstonia solanacearum UW163 | UW163_RS13560 | | MurR/RpiR family transcriptional regulator | no data | 27 | 95 |
| | Fusobacterium nucleatum SB010 | HUW76_09985 | | MurR/RpiR family transcriptional regulator | cofit | 21 | 88 |
| | Rhizobium sp. OAE497 | ABIE40_RS12055 | | MurR/RpiR family transcriptional regulator | sig. | 25 | 92 |
| | Bosea sp. OAE506 | ABIE41_RS16720 | | MurR/RpiR family transcriptional regulator | insig. | 28 | 94 |
| | Variovorax sp. SCN45 | GFF1217 | | Transcriptional regulator RpiR in protein degradation cluster | insig. | 26 | 97 |
| | Agrobacterium fabrum C58 | Atu2145 | | transcriptional regulator, RpiR family | sig. | 23 | 92 |
| | Bifidobacterium breve UCC2003 | BBR_RS13225 | | MurR/RpiR family transcriptional regulator | sig. | 24 | 94 |
| | Variovorax sp. OAS795 | ABID97_RS15420 | | MurR/RpiR family transcriptional regulator | insig. | 25 | 94 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS15550 | | transcriptional regulator | sig. | 28 | 89 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_08905 | | MurR/RpiR family transcriptional regulator | insig. | 24 | 94 |
| | Pseudomonas segetis P6 | MPMX49_02832 | | HTH-type transcriptional regulator HexR | sig. | 28 | 85 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_27995 | | RpiR family transcriptional regulator | strong | 25 | 91 |
| | Sinorhizobium meliloti 1021 | SMc02353 | | hypothetical protein | insig. | 23 | 96 |
| | Sinorhizobium meliloti 1021 | SMc01602 | | hypothetical protein | insig. | 24 | 92 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00163 | | glucokinase /transcriptional regulator, RpiR family | strong | 26 | 94 |
| | Escherichia fergusonii Becca | EFB2_04801 | | putative HTH-type transcriptional regulator YbbH | insig. | 24 | 81 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_15575 | | hypothetical protein | cofit | 31 | 43 |
| | Pseudomonas sp. S08-1 | OH686_02440 | | Phosphogluconate repressor HexR, RpiR family | strong | 27 | 86 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02401 | | hypothetical protein | cofit | 25 | 93 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c27130 | | putative HTH-type transcriptional regulator | strong | 22 | 92 |
| | Pseudomonas sp. S08-1 | OH686_23395 | | hypothetical protein | strong | 25 | 91 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS05010 | | RpiR family transcriptional regulator | strong | 25 | 94 |
| | Paraburkholderia graminis OAS925 | ABIE53_001273 | | glucokinase | strong | 25 | 94 |