Homologs of ABID97_RS17200 from Variovorax sp. OAS795

ribonuclease R
SEED: 3'-to-5' exoribonuclease RNase R
KEGG: ribonuclease R

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. OAS795 ABID97_RS17200 ribonuclease R strong 100 100
o Variovorax sp. SCN45 GFF399 3'-to-5' exoribonuclease RNase R cofit 96 100
o Acidovorax sp. GW101-3H11 Ac3H11_412 3'-to-5' exoribonuclease RNase R strong 81 100
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4921 3'-to-5' exoribonuclease RNase R cofit 78 94
o Paraburkholderia graminis OAS925 ABIE53_001940 ribonuclease R strong 62 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00712 RNAse R strong 65 89
  Burkholderia phytofirmans PsJN BPHYT_RS08455 ribonuclease R sig. 65 89
  Cupriavidus basilensis FW507-4G11 RR42_RS13065 ribonuclease R strong 63 89
o Ralstonia solanacearum GMI1000 RS_RS06155 ribonuclease R strong 62 95
o Ralstonia solanacearum PSI07 RPSI07_RS18030 ribonuclease R strong 62 95
o Paraburkholderia sabiae LMG 24235 QEN71_RS22925 ribonuclease R strong 64 89
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15345 ribonuclease R strong 64 89
o Ralstonia solanacearum UW163 UW163_RS12810 ribonuclease R insig. 64 89
o Ralstonia sp. UNC404CL21Col ABZR87_RS10985 ribonuclease R sig. 63 91
o Herbaspirillum seropedicae SmR1 HSERO_RS09290 ribonuclease R strong 62 89
o Castellaniella sp019104865 MT123 ABCV34_RS06625 ribonuclease R cofit 56 90
o Methylophilus sp. DMC18 GFF635 Ribonuclease R insig. 50 99
  Dechlorosoma suillum PS Dsui_3128 ribonuclease R cofit 53 90
o Pseudomonas putida KT2440 PP_4880 exoribonuclease R strong 47 99
o Pseudomonas sp. BP01 JOY50_RS17320 rnr ribonuclease R insig. 47 99
o Pseudomonas fluorescens FW300-N2C3 AO356_08610 exoribonuclease R strong 48 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R strong 48 98
o Pseudomonas simiae WCS417 PS417_02555 exoribonuclease R strong 51 89
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00747 Ribonuclease R cofit 48 94
o Pseudomonas fluorescens SBW25 PFLU_RS02625 ribonuclease R cofit 51 89
o Pseudomonas fluorescens SBW25-INTG PFLU_RS02625 ribonuclease R strong 51 89
o Pseudomonas sp. SVBP6 COO64_RS17955 rnr ribonuclease R insig. 47 99
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R strong 48 93
o Pseudomonas sp. RS175 PFR28_05130 Ribonuclease R strong 47 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_144 3'-to-5' exoribonuclease RNase R strong 46 100
o Pseudomonas sp. DMC3 GFF3229 Ribonuclease R sig. 50 89
  Pseudomonas fluorescens FW300-N2E3 AO353_13200 exoribonuclease R strong 50 89
  Pseudomonas syringae pv. syringae B728a Psyr_0579 RNAse R strong 48 91
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0579 RNAse R strong 48 91
  Pseudomonas aeruginosa PA14 IKLFDK_28865 ribonuclease R strong 46 99
o Kangiella aquimarina DSM 16071 B158DRAFT_1989 ribonuclease R cofit 49 89
o Pseudomonas segetis P6 MPMX49_04145 Ribonuclease R strong 47 94
o Shewanella sp. ANA-3 Shewana3_0697 RNAse R (RefSeq) strong 46 95
  Pseudomonas sp. S08-1 OH686_15910 ribonuclease R cofit 48 89
o Shewanella oneidensis MR-1 SO3935 vacB ribonuclease R (NCBI ptt file) strong 48 89
o Shewanella loihica PV-4 Shew_3289 ribonuclease R (RefSeq) strong 45 99
o Marinobacter adhaerens HP15 HP15_622 exoribonuclease R strong 47 89
  Shewanella amazonensis SB2B Sama_3067 exoribonuclease II (RefSeq) strong 47 90
o Pseudomonas stutzeri RCH2 Psest_0691 ribonuclease R strong 47 93
o Alteromonas macleodii MIT1002 MIT1002_03606 Ribonuclease R cofit 45 95
  Escherichia coli ECRC101 MCAODC_02735 rnr ribonuclease R sig. 45 89
  Escherichia coli ECRC102 NIAGMN_10070 rnr ribonuclease R cofit 45 89
  Escherichia coli ECRC98 JDDGAC_15860 rnr ribonuclease R cofit 45 89
  Escherichia coli ECRC99 KEDOAH_15935 rnr ribonuclease R no data 45 89
  Escherichia coli ECRC100 OKFHMN_12220 rnr ribonuclease R cofit 45 89
  Escherichia coli BL21 ECD_04046 exoribonuclease R, RNase R insig. 45 89
  Escherichia coli BW25113 b4179 vacB putative enzyme (VIMSS) strong 45 89
o Escherichia fergusonii Becca EFB2_04356 Ribonuclease R insig. 45 89
  Escherichia coli ECOR27 NOLOHH_04485 rnr ribonuclease R insig. 45 89
  Escherichia coli ECRC62 BNILDI_07005 rnr ribonuclease R cofit 45 89
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03863 Ribonuclease R cofit 45 89
  Rhodanobacter denitrificans MT42 LRK55_RS00235 ribonuclease R strong 47 89
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00495 ribonuclease R strong 47 89
o Escherichia coli ECOR38 HEPCGN_10450 rnr ribonuclease R cofit 45 89
o Escherichia coli Nissle 1917 ECOLIN_RS24265 ribonuclease R sig. 45 89
  Rhodanobacter sp. FW510-T8 OKGIIK_06755 rnr ribonuclease R strong 48 89
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09655 ribonuclease R cofit 47 89
o Vibrio cholerae E7946 ATCC 55056 CSW01_13155 ribonuclease R cofit 44 97
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08270 ribonuclease R strong 47 89
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11220 ribonuclease R cofit 43 96
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 strong 45 89
o Rahnella sp. WP5 EX31_RS08785 ribonuclease R insig. 44 95
o Pantoea sp. MT58 IAI47_02625 ribonuclease R sig. 43 96
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13230 rnr ribonuclease R strong 45 89
  Erwinia tracheiphila SCR3 LU632_RS21750 rnr ribonuclease R strong 45 89
o Enterobacter sp. TBS_079 MPMX20_00460 Ribonuclease R sig. 44 89
o Erwinia amylovora T8 OLJFJH_02470 ribonuclease R strong 43 99
o Klebsiella pneumoniae MKP103 KDGMDA_11075 ribonuclease R cofit 44 89
o Pectobacterium carotovorum WPP14 HER17_RS03835 ribonuclease R cofit 43 99
o Klebsiella michiganensis M5al BWI76_RS02575 exoribonuclease R sig. 41 99
o Serratia liquefaciens MT49 IAI46_01660 ribonuclease R insig. 43 97
  Enterobacter asburiae PDN3 EX28DRAFT_3376 ribonuclease R strong 44 89
o Dickeya dianthicola ME23 DZA65_RS18405 ribonuclease R insig. 42 99
o Dickeya dianthicola 67-19 HGI48_RS17315 ribonuclease R cofit 43 99
o Dickeya dadantii 3937 DDA3937_RS17260 ribonuclease R sig. 43 95
o Acinetobacter radioresistens SK82 MPMX26_02684 Ribonuclease R cofit 44 91
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R strong 44 89
  Lysobacter sp. OAE881 ABIE51_RS07475 ribonuclease R cofit 43 90
o Acinetobacter baumannii LAC-4 RR41_RS02345 ribonuclease R strong 42 94
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10530 ribonuclease R strong 32 89
  Desulfovibrio vulgaris Hildenborough JW710 DVU2467 rnr ribonuclease R (TIGR) insig. 36 89
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04270 ribonuclease R strong 32 89
  Xanthobacter sp. DMC5 GFF1081 Ribonuclease R insig. 37 82
  Desulfovibrio vulgaris Miyazaki F DvMF_0925 ribonuclease R (RefSeq) sig. 36 93
  Azospirillum brasilense Sp245 AZOBR_RS16165 ribonuclease R insig. 37 77
o Magnetospirillum magneticum AMB-1 AMB_RS04465 ribonuclease R cofit 36 85
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0669 ribonuclease R no data 32 90
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08325 ribonuclease R cofit 36 85
o Phaeobacter inhibens DSM 17395 PGA1_c36430 putative ribonuclease R strong 37 82
  Rhodospirillum rubrum S1H Rru_A3203 ribonuclease R (NCBI) cofit 36 84
o Phocaeicola dorei CL03T12C01 ABI39_RS06100 ribonuclease R sig. 31 89
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS05885 ribonuclease R strong 31 89
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10970 ribonuclease R strong 31 89
  Sinorhizobium meliloti 1021 SMc01365 exoribonuclease II protein sig. 34 85
o Cellulophaga baltica 18 M666_RS05085 ribonuclease R no data 32 89