Homologs of Sama_3103 from Shewanella amazonensis SB2B

cold-shock DNA-binding domain-containing protein (RefSeq)
SEED: Cold shock domain family protein

91 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella amazonensis SB2B Sama_3103 cold-shock DNA-binding domain-containing protein (RefSeq) insig. 100 100
o Shewanella oneidensis MR-1 SO0733 cold shock domain family protein (NCBI ptt file) insig. 47 99
o Shewanella loihica PV-4 Shew_0485 cold-shock DNA-binding domain-containing protein (RefSeq) insig. 44 99
o Shewanella sp. ANA-3 Shewana3_3544 cold-shock DNA-binding protein family protein (RefSeq) sig. 48 99
o Rhodanobacter denitrificans MT42 LRK55_RS18020 cold shock domain-containing protein insig. 40 98
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00025 cold shock domain-containing protein sig. 40 98
o Acidovorax sp. GW101-3H11 Ac3H11_3397 Conserved domain protein insig. 35 98
o Desulfovibrio vulgaris Hildenborough JW710 DVU1858 cold shock domain protein (TIGR) insig. 33 99
  Pseudomonas sp. SVBP6 COO64_RS09010 excalibur calcium-binding domain-containing protein insig. 45 51
  Shewanella loihica PV-4 Shew_3072 cold-shock protein, DNA-binding (RefSeq) insig. 27 98
  Kangiella aquimarina DSM 16071 B158DRAFT_2245 Predicted membrane protein insig. 32 56
  Pseudomonas stutzeri RCH2 Psest_0769 Predicted membrane protein sig. 39 41
  Pseudomonas sp. S08-1 OH686_00735 Cold-shock DNA-binding domain insig. 39 38
  Alteromonas macleodii MIT1002 MIT1002_03661 cold shock-like protein CspD insig. 27 64
  Pseudomonas aeruginosa MRSN321 DY961_RS28815 DUF1294 domain-containing protein insig. 39 38
  Pseudomonas aeruginosa PUPa3 DQ20_RS38300 DUF1294 domain-containing protein insig. 39 38
  Pseudomonas aeruginosa PA14 IKLFDK_09570 DUF1294 domain-containing protein insig. 38 38
  Pseudomonas segetis P6 ACVTMO_RS10995 DUF1294 domain-containing protein insig. 39 36
  Methylophilus sp. DMC18 GFF1308 hypothetical protein insig. 35 32
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07090 cold-shock protein no data 38 34
  Rhizobium sp. OAE497 ABIE40_RS19865 cold-shock protein sig. 41 33
  Sinorhizobium meliloti 1021 SMa0181 CspA5 cold shock protein transcriptional regulator no data 41 33
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2336.1 putative membrane protein insig. 27 54
  Phaeobacter inhibens DSM 17395 PGA1_c26780 cold shock protein CspA strong 38 34
  Bosea sp. OAE506 ABIE41_RS08495 cold shock domain-containing protein insig. 40 34
  Bosea sp. OAE506 ABIE41_RS12450 cold-shock protein no data 42 31
  Rhodospirillum rubrum S1H Rru_A1521 Cold-shock DNA-binding domain protein (NCBI) no data 37 33
  Lysobacter sp. OAE881 ABIE51_RS13800 cold-shock protein strong 37 34
  Variovorax sp. OAS795 ABID97_RS14410 cold shock and DUF1294 domain-containing protein insig. 31 37
  Bosea sp. OAE506 ABIE41_RS07590 cold-shock protein insig. 42 33
  Caulobacter crescentus NA1000 CCNA_02705 cold shock protein CspC no data 38 33
  Caulobacter crescentus NA1000 Δfur CCNA_02705 cold shock protein CspC no data 38 33
  Alteromonas macleodii MIT1002 MIT1002_01832 Cold shock-like protein CspD cofit 37 31
  Phaeobacter inhibens DSM 17395 PGA1_c11060 cold shock-like protein CspE insig. 37 33
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS11915 cold-shock protein insig. 35 34
  Rhodanobacter sp. FW510-T8 OKGIIK_07815 cspC cold-shock protein no data 35 34
  Cellulophaga baltica 18 M666_RS19180 cold-shock protein no data 40 31
  Bosea sp. OAE506 ABIE41_RS22385 cold-shock protein no data 35 34
  Rhodanobacter denitrificans MT42 LRK55_RS16740 cold-shock protein no data 35 34
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS17025 cold-shock protein insig. 35 34
  Methylophilus sp. DMC18 GFF958 Cold shock protein CspV insig. 33 37
  Erwinia tracheiphila SCR3 LU632_RS16440 cspE transcription antiterminator/RNA stability regulator CspE no data 35 33
  Erwinia amylovora T8 OLJFJH_17275 transcription antiterminator/RNA stability regulator CspE no data 35 33
  Methylophilus sp. DMC18 GFF276 Cold shock-like protein CspA insig. 33 35
  Acinetobacter radioresistens SK82 MPMX26_02852 hypothetical protein insig. 22 62
  Rhodopseudomonas palustris CGA009 TX73_006020 cold-shock protein sig. 41 27
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3660.1 Cold shock protein CspD insig. 33 37
  Rahnella sp. WP5 EX31_RS10935 transcription antiterminator/RNA stability regulator CspE cofit 32 36
  Acinetobacter baumannii LAC-4 RR41_RS01305 DUF1294 domain-containing protein insig. 40 23
  Sinorhizobium meliloti 1021 SMc01428 cold shock transcription regulator protein insig. 39 33
  Paraburkholderia sabiae LMG 24235 QEN71_RS36275 cold-shock protein no data 34 34
  Dickeya dianthicola 67-19 HGI48_RS09565 cold shock-like protein CspD cofit 32 37
  Dickeya dianthicola ME23 DZA65_RS09875 cold shock-like protein CspD insig. 32 37
  Burkholderia phytofirmans PsJN BPHYT_RS17545 cold-shock protein sig. 32 34
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05686 cold-shock DNA-binding protein family no data 32 34
  Paraburkholderia graminis OAS925 ABIE53_003669 CspA family cold shock protein insig. 32 34
  Ralstonia sp. UNC404CL21Col ABZR87_RS19675 cold-shock protein insig. 32 34
  Dechlorosoma suillum PS Dsui_0007 cold shock protein insig. 31 35
  Rhizobium sp. OAE497 ABIE40_RS10900 cold-shock protein insig. 40 31
  Sinorhizobium meliloti 1021 SMa0126 CspA8 Cold shock family protein insig. 37 35
  Pseudomonas fluorescens SBW25 PFLU_RS20330 cold-shock protein insig. 36 30
  Pseudomonas fluorescens SBW25-INTG PFLU_RS20330 cold-shock protein strong 36 30
  Pseudomonas orientalis W4I3 QF045_RS20505 cold-shock protein sig. 36 30
  Pseudomonas simiae WCS417 PS417_18355 DNA-binding protein strong 36 30
  Pseudomonas sp. DMC3 GFF907 Cold shock protein CapB cofit 35 33
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03901 Cold shock protein CapB cofit 35 33
  Pseudomonas sp. SVBP6 COO64_RS10375 cold-shock protein insig. 35 33
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3902 Cold shock protein CspG no data 35 33
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_6025 Cold shock protein CspG no data 35 33
  Pseudomonas fluorescens FW300-N2E3 AO353_20865 cold-shock protein strong 35 33
  Pseudomonas fluorescens FW300-N2C3 AO356_00920 cold-shock protein strong 35 33
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_171 Cold shock protein CspG no data 35 33
  Serratia liquefaciens MT49 IAI46_16260 transcription antiterminator/RNA stability regulator CspE no data 32 36
  Enterobacter sp. TBS_079 MPMX20_02529 Cold shock protein CspA sig. 36 28
  Pseudomonas sp. RS175 PFR28_02727 Cold shock protein CapB strong 35 33
  Pseudomonas syringae pv. syringae B728a Psyr_2160 cold-shock DNA-binding protein family insig. 49 19
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2160 cold-shock DNA-binding protein family no data 49 19
  Dickeya dadantii 3937 DDA3937_RS06115 transcription antiterminator/RNA stability regulator CspE no data 33 33
  Dickeya dianthicola 67-19 HGI48_RS06165 transcription antiterminator/RNA stability regulator CspE no data 33 33
  Dickeya dianthicola ME23 DZA65_RS06510 transcription antiterminator/RNA stability regulator CspE insig. 33 33
  Castellaniella sp019104865 MT123 ABCV34_RS11730 cold-shock protein sig. 37 33
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04820 cold-shock protein no data 35 32
  Ralstonia solanacearum PSI07 RPSI07_RS12565 cold-shock protein no data 35 32
  Ralstonia solanacearum UW163 UW163_RS08850 cold-shock protein no data 35 32
  Herbaspirillum seropedicae SmR1 HSERO_RS07020 cold-shock protein no data 35 34
  Burkholderia phytofirmans PsJN BPHYT_RS34185 cold-shock protein sig. 32 34
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS18735 cold-shock protein insig. 32 34
  Ralstonia solanacearum GMI1000 RS_RS22215 cold-shock protein sig. 32 34
  Ralstonia solanacearum PSI07 RPSI07_RS04860 cold-shock protein no data 32 34
  Ralstonia solanacearum UW163 UW163_RS20395 cold-shock protein insig. 32 34
  Klebsiella michiganensis M5al BWI76_RS07980 cold-shock protein no data 32 35