Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.1635.1 and Xcc-8004.1636.1 are separated by 15 nucleotidesXcc-8004.1636.1 and Xcc-8004.1637.1 are separated by 27 nucleotidesXcc-8004.1637.1 and Xcc-8004.1638.1 are separated by 145 nucleotidesXcc-8004.1638.1 and Xcc-8004.1639.1 are separated by 175 nucleotides Xcc-8004.1635.1: Xcc-8004.1635.1 - hypothetical protein, at 1,576,448 to 1,576,576 Xcc-8004.1635.1 Xcc-8004.1636.1: Xcc-8004.1636.1 - hypothetical protein, at 1,576,592 to 1,577,011 Xcc-8004.1636.1 Xcc-8004.1637.1: Xcc-8004.1637.1 - FIG01210422: hypothetical protein, at 1,577,039 to 1,577,551 Xcc-8004.1637.1 Xcc-8004.1638.1: Xcc-8004.1638.1 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,577,697 to 1,577,933 Xcc-8004.1638.1 Xcc-8004.1639.1: Xcc-8004.1639.1 - hypothetical protein, at 1,578,109 to 1,578,369 Xcc-8004.1639.1
Group Condition Xcc-8004.1635.1 Xcc-8004.1636.1 Xcc-8004.1637.1 Xcc-8004.1638.1 Xcc-8004.1639.1
in planta xylem Xylemvessel barcodes T0L1P4 N.D. -1.4 +0.2 N.D. -0.5
in planta xylem Xylemvessel barcodes T0L1P3 N.D. -0.8 -0.2 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.8 -0.1 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.8 -0.3 N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.3 -0.6 N.D. -0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -0.2 +0.5 N.D. -0.9
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. -0.7 -0.1 N.D. +0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. -0.6 -0.1 N.D. +0.1
carbon source D-Glucose 16.67 mM (C) N.D. -0.6 +0.1 N.D. -0.1
carbon source Citric Acid 10mM (C) N.D. +0.4 -0.1 N.D. -0.9
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -0.4 -0.4 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.7 +0.3 N.D. +0.0
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. -0.7 +0.1 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.3 -0.3 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.6 +0.0 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.2 -0.4 N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.4 -0.1 N.D. +0.4
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -0.7 +0.6 N.D. +0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.3 +0.4 N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 -0.5 N.D. +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.1 -0.3 N.D. +0.5
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. -0.2 +0.1 N.D. +0.5
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. -0.2 -0.1 N.D. +0.6
r2a control R2A control N.D. +0.3 -0.2 N.D. +0.3
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. -0.2 +0.2 N.D. +0.5
moka MOKA N.D. +0.6 +0.1 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.2 -0.3 N.D. +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.6 -0.0 N.D. +0.3
clovis xylem sap Clovis xylem sap N.D. +0.7 +0.2 N.D. -0.0
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. +0.5 +0.1 N.D. +0.3
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Xcc-8004.1635.1
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Xcc-8004.1636.1
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Xcc-8004.1638.1
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Xcc-8004.1639.1
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