Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.1135.1 and Xcc-8004.1136.1 are separated by 132 nucleotidesXcc-8004.1136.1 and Xcc-8004.1137.1 are separated by 101 nucleotidesXcc-8004.1137.1 and Xcc-8004.1138.1 overlap by 4 nucleotidesXcc-8004.1138.1 and Xcc-8004.1144.1 are separated by 512 nucleotides Xcc-8004.1135.1: Xcc-8004.1135.1 - FIG01210448: hypothetical protein, at 1,082,619 to 1,083,068 Xcc-8004.1135.1 Xcc-8004.1136.1: Xcc-8004.1136.1 - Ribose 5-phosphate isomerase A (EC 5.3.1.6), at 1,083,201 to 1,083,848 Xcc-8004.1136.1 Xcc-8004.1137.1: Xcc-8004.1137.1 - FIG006231: RNA-binding protein, at 1,083,950 to 1,084,420 Xcc-8004.1137.1 Xcc-8004.1138.1: Xcc-8004.1138.1 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 1,084,417 to 1,085,058 Xcc-8004.1138.1 Xcc-8004.1144.1: Xcc-8004.1144.1 - Z-ring-associated protein ZapA, at 1,085,571 to 1,085,867 Xcc-8004.1144.1
Group Condition Xcc-8004.1135.1 Xcc-8004.1136.1 Xcc-8004.1137.1 Xcc-8004.1138.1 Xcc-8004.1144.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.3 N.D. -5.3 -0.9 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.6 N.D. -2.3 -0.9 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.6 N.D. -1.8 -1.0 -0.3
carbon source Citric Acid 10mM (C) -0.5 N.D. -2.0 -1.6 -0.3
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -1.5 N.D. +0.1 -2.3 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 N.D. -2.4 -1.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 N.D. -1.8 -1.5 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.8 N.D. -0.1 -1.3 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. -2.5 -1.1 +0.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.2 N.D. -1.1 -2.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. -1.4 -1.7 +0.1
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -0.9 N.D. -1.9 -0.0 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 N.D. -2.2 -0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. -1.8 -0.8 -0.2
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -0.5 N.D. -1.6 -0.2 -0.2
carbon source Citric Acid 16.67 mM (C) +1.1 N.D. +0.1 -3.0 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.7 N.D. -0.3 -0.8 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 N.D. -0.7 -1.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 N.D. -0.6 -0.9 -0.1
r2a control R2A control -2.0 N.D. -0.2 +0.1 -0.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.1 N.D. -2.0 -0.2 -0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -1.1 N.D. +0.2 -0.8 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 N.D. -0.7 -0.8 +0.5
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +1.2 N.D. -1.6 -1.0 -0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.2 N.D. -1.4 -0.6 +0.3
in planta xylem Xylemvessel barcodes T0L1P4 -0.8 N.D. +0.7 -1.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 N.D. +0.8 -1.5 -0.0
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.2 N.D. +1.6 -1.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 N.D. +1.3 -1.1 -0.1
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) +0.4 N.D. +1.5 -0.2 +0.3
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Xcc-8004.1135.1
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Xcc-8004.1136.1
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Xcc-8004.1138.1
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Xcc-8004.1144.1
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