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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02203 and SMc02155 are separated by 158 nucleotides
SMc02155 and SMc02154 are separated by 14 nucleotides
SMc02154 and SMc04429 overlap by 4 nucleotides
SMc04429 and SMc02153 are separated by 1 nucleotides
SMc02203: SMc02203 - hypothetical protein, at 547,672 to 548,811
SMc02203
SMc02155: SMc02155 - hypothetical protein, at 548,970 to 551,798
SMc02155
SMc02154: SMc02154 - hypothetical protein, at 551,813 to 554,713
SMc02154
SMc04429: SMc04429 - hypothetical protein, at 554,710 to 555,357
SMc04429
SMc02153: SMc02153 - hypothetical protein, at 555,359 to 556,690
SMc02153
Group
Condition
SMc02203
SMc02155
SMc02154
SMc04429
SMc02153
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-1.6
-1.0
+0.1
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-1.4
-0.8
-0.2
+0.0
lb no stress control
LB no stress control
-0.1
-1.1
-0.3
-0.2
-0.2
dmso control
DMSO control
-0.1
-1.2
-0.4
-0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-1.4
-0.8
+0.0
+0.4
lb no stress control
LB no stress control
-0.4
-1.1
-0.2
+0.1
-0.2
nitrogen source
NAG (N)
-0.3
-1.5
-0.2
+0.2
+0.0
dmso control
DMSO control
+0.0
-1.2
-0.3
-0.1
-0.1
lb no stress control
LB no stress control
+0.0
-1.1
-0.4
-0.1
-0.1
dmso control
DMSO control
-0.3
-1.0
-0.4
-0.1
+0.1
lb no stress control
LB no stress control
-0.1
-1.0
-0.3
-0.1
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
-0.5
-0.3
-0.1
-0.3
dmso control
DMSO control
-0.2
-1.1
-0.3
-0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-1.1
-0.8
+0.2
+0.2
stress
1-octen-3-ol 0.6030326667 mM
-0.1
-0.6
-0.2
-0.3
-0.3
stress
3-octanone 2.655166667 mM
-0.2
-0.6
-0.2
-0.1
-0.3
temperature
LB, 23C
-0.3
-0.6
-0.6
+0.1
+0.1
stress
A22 0.02 mg/ml
-0.2
-0.9
+0.0
-0.1
-0.1
temperature
LB, 23C
-0.3
-0.6
-0.5
+0.2
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-1.0
-0.7
+0.1
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-0.8
-0.2
+0.2
-0.1
carbon source
NAG (C)
-0.4
-0.8
-0.0
+0.0
+0.1
stress
Aluminum chloride
-0.2
-0.8
-0.2
-0.1
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-0.5
-0.2
+0.2
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
-0.3
-0.1
+0.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-1.4
-0.7
+0.5
+0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
-1.0
+0.2
+0.1
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
-0.8
+0.4
+0.3
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.2
+0.3
+0.3
+0.4
stress
perchlorate 10 mM
+0.1
+0.1
+0.4
+0.6
+0.4
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